9UZ9
RNA polymerase II elongation complex stalled at SHL(-6) in the hexasome of the overlapping dinucleosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA-directed RNA polymerase subunit | polymer | 1743 | 194107.4 | 1 | UniProt (C4R4Y0) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb1 |
| 2 | B (B) | DNA-directed RNA polymerase subunit beta | polymer | 1227 | 139746.1 | 1 | UniProt (F2QTX9) | Komagataella phaffii GS115 | |
| 3 | C (C) | RNA polymerase II third largest subunit B44, part of central core | polymer | 304 | 34216.3 | 1 | UniProt (C4R7L2) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb3 |
| 4 | D (D) | RNA polymerase II subunit B32 | polymer | 186 | 20623.0 | 1 | UniProt (C4R2U9) | Komagataella phaffii GS115 (Yeast Pichia pastoris) | |
| 5 | E (E) | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 214 | 24962.7 | 1 | UniProt (C4R3P8) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb5 |
| 6 | F (F) | RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III | polymer | 155 | 17803.6 | 1 | UniProt (C4R1V1) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb6 |
| 7 | G (G) | RNA polymerase II subunit | polymer | 171 | 18802.6 | 1 | UniProt (C4R9A1) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb7 |
| 8 | H (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 145 | 16249.2 | 1 | UniProt (C4R273) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb8 |
| 9 | I (I) | DNA-directed RNA polymerase subunit | polymer | 115 | 13612.3 | 1 | UniProt (F2QPE6) | Komagataella phaffii GS115 | |
| 10 | J (J) | RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III | polymer | 72 | 8554.1 | 1 | UniProt (C4R009) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb10 |
| 11 | K (K) | RNA polymerase II subunit B12.5 | polymer | 118 | 13832.9 | 1 | UniProt (C4R3Z5) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb11 |
| 12 | L (L) | RNA polymerase subunit ABC10-alpha | polymer | 72 | 7862.0 | 1 | UniProt (F2QMI1) | Komagataella phaffii GS115 | RNA polymerase II subunit Rpb12 |
| 13 | M (N) | DNA (270-MER) | polymer | 279 | 85795.4 | 1 | synthetic construct | ||
| 14 | N (P) | RNA (5'-R(P*UP*GP*UP*GP*UP*UP*UP*GP*GP*GP*U)-3') | polymer | 11 | 3518.1 | 1 | synthetic construct | ||
| 15 | O (T) | DNA (279-MER) | polymer | 279 | 86524.0 | 1 | synthetic construct | ||
| 16 | P, T, X, Z (a, e, k, m) | Histone H3.3 | polymer | 139 | 15643.3 | 4 | UniProt (P84243) | Homo sapiens (human) | |
| 17 | AA, Q, U, Y (b, f, l, n) | Histone H4 | polymer | 106 | 11676.7 | 4 | UniProt (P62805) | Homo sapiens (human) | |
| 18 | BA, R, V (c, g, o) | Histone H2A type 1-B/E | polymer | 133 | 14447.8 | 3 | UniProt (P04908) | Homo sapiens (human) | Histone H2A.2,Histone H2A/a,Histone H2A/m |
| 19 | CA, S, W (d, h, p) | Histone H2B type 1-J | polymer | 129 | 14217.5 | 3 | UniProt (P06899) | Homo sapiens (human) | Histone H2B.1,Histone H2B.r,H2B/r |
| 20 | DA, EA, GA, HA, IA... (A, B, C, I, J...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) PubChem (32051) | |||
| 21 | FA (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) PubChem (888) |
Sequence modifications
a, e, k, m: 0 - 135 (UniProt: P84243)
b, f, l, n: 0 - 102 (UniProt: P62805)
c, g, o: 0 - 129 (UniProt: P04908)
d, h, p: 0 - 125 (UniProt: P06899)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 29 |
| Total formula weight | 881485.6 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 547.6 | |
| All* | Total formula weight | 882033.2 |
