9UJT
RNA polymerase II elongation complex stalled at SHL(-0.5) of the H3-H4 octasome (tetrasome)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (N) | DNA (198-MER) | polymer | 198 | 61372.9 | 1 | synthetic construct | ||
| 2 | B (T) | DNA (198-MER) | polymer | 198 | 60879.0 | 1 | synthetic construct | ||
| 3 | C (A) | DNA-directed RNA polymerase subunit | polymer | 1743 | 194107.4 | 1 | UniProt (C4R4Y0) Pfam (PF04997) Pfam (PF05001) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) | Komagataella phaffii GS115 | |
| 4 | D (B) | DNA-directed RNA polymerase subunit beta | polymer | 1227 | 139746.1 | 1 | UniProt (C4QZQ7) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) | Komagataella phaffii GS115 | |
| 5 | E (C) | RNA polymerase II third largest subunit B44, part of central core | polymer | 304 | 34216.3 | 1 | UniProt (C4R7L2) Pfam (PF01193) Pfam (PF01000) | Komagataella phaffii GS115 | |
| 6 | F (D) | RNA polymerase II subunit B32 | polymer | 186 | 20623.0 | 1 | UniProt (C4R2U9) Pfam (PF03874) | Komagataella phaffii GS115 | |
| 7 | G (E) | RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III | polymer | 214 | 24962.7 | 1 | UniProt (C4R3P8) Pfam (PF03871) Pfam (PF01191) | Komagataella phaffii GS115 | |
| 8 | H (F) | RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III | polymer | 155 | 17803.6 | 1 | UniProt (C4R1V1) Pfam (PF01192) | Komagataella phaffii GS115 | |
| 9 | I (G) | RNA polymerase II subunit | polymer | 171 | 18802.6 | 1 | UniProt (C4R9A1) Pfam (PF03876) Pfam (PF00575) | Komagataella phaffii GS115 | |
| 10 | J (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 145 | 16249.2 | 1 | UniProt (C4R273) Pfam (PF03870) | Komagataella phaffii GS115 | |
| 11 | K (I) | DNA-directed RNA polymerase subunit | polymer | 115 | 13612.3 | 1 | UniProt (F2QPE6) | Komagataella phaffii GS115 | DNA-directed RNA polymerase subunit, Rpb9 |
| 12 | L (J) | RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III | polymer | 72 | 8554.1 | 1 | UniProt (C4R009) Pfam (PF01194) | Komagataella phaffii GS115 | |
| 13 | M (K) | RNA polymerase II subunit B12.5 | polymer | 118 | 13832.9 | 1 | UniProt (C4R3Z5) Pfam (PF13656) | Komagataella phaffii GS115 | |
| 14 | N (L) | RNA polymerase subunit ABC10-alpha | polymer | 72 | 7862.0 | 1 | UniProt (F2QMI1) | Komagataella phaffii GS115 | |
| 15 | O (P) | RNA (5'-R(P*CP*UP*UP*GP*GP*GP*UP*GP*UP*UP*U)-3') | polymer | 11 | 3478.0 | 1 | synthetic construct | ||
| 16 | P, R (e, g) | Histone H3.1 | polymer | 139 | 15719.4 | 2 | UniProt (P68431) Pfam (PF00125) | Homo sapiens (human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
| 17 | Q, S (f, h) | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) | Homo sapiens (human) |
Sequence modifications
e, g: 0 - 135 (UniProt: P68431)
f, h: 0 - 102 (UniProt: P62805)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 19 |
| Total formula weight | 690894.5 | |
| All* | Total formula weight | 690894.5 |
