9UHQ
Local refinement of JN.1 spike in complex with antibody BA5-39
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike protein S1 | polymer | 198 | 22478.4 | 1 | UniProt (P0DTC2) Pfam (PF09408) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
| 2 | B (B) | BA5-39-L | polymer | 107 | 11844.1 | 1 | Homo sapiens | ||
| 3 | C (C) | BA5-39-H | polymer | 119 | 12673.2 | 1 | Homo sapiens |
Sequence modifications
A: 1 - 198 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Val 1 | Ile 332 | conflict |
| His 8 | Gly 339 | variant |
| Thr 25 | Lys 356 | conflict |
| Phe 40 | Ser 371 | variant |
| Pro 42 | Ser 373 | variant |
| Phe 44 | Ser 375 | variant |
| Ala 45 | Thr 376 | variant |
| Lys 72 | Arg 403 | conflict |
| Asn 74 | Asp 405 | variant |
| Ser 77 | Arg 408 | variant |
| Asn 86 | Lys 417 | variant |
| Lys 109 | Asn 440 | variant |
| His 114 | Val 445 | conflict |
| Ser 115 | Gly 446 | variant |
| Asp 119 | Asn 450 | conflict |
| Trp 121 | Leu 452 | conflict |
| Ser 124 | Leu 455 | conflict |
| Lys 129 | Asn 460 | variant |
| Asn 146 | Ser 477 | variant |
| Lys 147 | Thr 478 | variant |
| Lys 150 | Asn 481 | conflict |
| - | Val 483 | deletion |
| Lys 152 | Glu 484 | variant |
| Pro 154 | Phe 486 | variant |
| Arg 166 | Gln 498 | variant |
| Tyr 169 | Asn 501 | variant |
| His 173 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 46995.7 | |
| All* | Total formula weight | 46995.7 |
