9UD5
Cryo-EM structure of Na+-translocating NADH-ubiquinone oxidoreductase from Vibrio cholerae reduced by NADH, with bound korormicin A
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Na(+)-translocating NADH-quinone reductase subunit A | polymer | 446 | 48680.7 | 1 | UniProt (A5F5X1) | Vibrio cholerae O395 | Na(+)-NQR subunit A,Na(+)-translocating NQR subunit A,NQR complex subunit A,NQR-1 subunit A |
| 2 | B (B) | Na(+)-translocating NADH-quinone reductase subunit B | polymer | 415 | 45390.9 | 1 | UniProt (A5F5X0) | Vibrio cholerae O395 | Na(+)-NQR subunit B,Na(+)-translocating NQR subunit B,NQR complex subunit B,NQR-1 subunit B |
| 3 | C (C) | Na(+)-translocating NADH-quinone reductase subunit C | polymer | 257 | 27652.3 | 1 | UniProt (A5F5Y7) | Vibrio cholerae O395 | Na(+)-NQR subunit C,Na(+)-translocating NQR subunit C,NQR complex subunit C,NQR-1 subunit C |
| 4 | D (D) | Na(+)-translocating NADH-quinone reductase subunit D | polymer | 210 | 22853.2 | 1 | UniProt (A5F5Y6) | Vibrio cholerae O395 | Na(+)-NQR subunit D,Na(+)-translocating NQR subunit D,NQR complex subunit D,NQR-1 subunit D |
| 5 | E (E) | Na(+)-translocating NADH-quinone reductase subunit E | polymer | 198 | 21481.7 | 1 | UniProt (A5F5Y5) | Vibrio cholerae O395 | Na(+)-NQR subunit E,Na(+)-translocating NQR subunit E,NQR complex subunit E,NQR-1 subunit E |
| 6 | F (F) | Na(+)-translocating NADH-quinone reductase subunit F | polymer | 414 | 45942.4 | 1 | UniProt (A5F5Y4) | Vibrio cholerae O395 | Na(+)-NQR subunit F,Na(+)-translocating NQR subunit F,NQR complex subunit F,NQR-1 subunit F |
| 7 | G, L (B, C) | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 2 | Chemie (FMN) PubChem (710) PubChem (23585816) PubChem (8965) PubChem (51435500) PubChem (51435503) PubChem (643976) PubChem (5702760) PubChem (7048779) PubChem (7048781) PubChem (15559251) | |||
| 8 | H (B) | RIBOFLAVIN | non-polymer | 376.4 | 1 | Chemie (RBF) PubChem (1072) PubChem (176586505) PubChem (6759) PubChem (1561682) PubChem (46782882) PubChem (193301) PubChem (59733797) PubChem (89260495) PubChem (493570) PubChem (6328150) PubChem (7048775) PubChem (7048776) PubChem (12304941) | |||
| 9 | I (B) | Korormicin | non-polymer | 433.6 | 1 | Chemie (IQT) PubChem (21775519) PubChem (73836787) PubChem (101013937) PubChem (101013936) PubChem (9802927) PubChem (9845752) PubChem (122641814) PubChem (10836544) PubChem (15450586) PubChem (15450587) PubChem (162878225) PubChem (173654108) PubChem (134305796) PubChem (162878226) | |||
| 10 | J, M (B, D) | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMT) | |||
| 11 | K (C) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) PubChem (271) | |||
| 12 | N, O (D, F) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 13 | P (F) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 1 | Chemie (FAD) | |||
| 14 | Q, R, S, T, U (A, B, C, D, E) | water | water | 18.0 | 37 | Chemie (HOH) |
Sequence modifications
F: 1 - 408 (UniProt: A5F5Y4)
| PDB | External Database | Details |
|---|---|---|
| His 409 | - | expression tag |
| His 410 | - | expression tag |
| His 411 | - | expression tag |
| His 412 | - | expression tag |
| His 413 | - | expression tag |
| His 414 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 212001.1 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 3921.1 | |
| All* | Total formula weight | 215922.3 |
