Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9TS7

Structure of the Plant mitochondrial initiation complex, (SSU, LSU, initiator tRNA, mRNA)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (1)	26S rRNA	polymer	2923	944628.8	1		Brassica oleracea var. botrytis
2	B (1B)	Large ribosomal subunit protein uL2 C-terminal domain-containing protein	polymer	217	23174.3	1	UniProt (A0A0D3B6N5)	Brassica oleracea var. botrytis
3	C (1C)	uL2m N-ter mitochondrial	polymer	286	31617.9	1		Brassica oleracea var. botrytis
4	D (1D)	50S ribosomal protein L3-2, chloroplastic	polymer	319	35071.5	1	UniProt (A0A3P6FIT9)	Brassica oleracea var. botrytis
5	E (1E)	Large ribosomal subunit protein uL4m	polymer	296	32921.0	1	UniProt (A0A3P6EHY4)	Brassica oleracea var. botrytis
6	F (1F)	Large ribosomal subunit protein uL5m	polymer	185	21258.3	1	UniProt (A0A068BF07)	Brassica oleracea var. botrytis	60S ribosomal protein L5,mitochondrial
7	G (1G)	Large ribosomal subunit protein uL6 alpha-beta domain-containing protein	polymer	102	11570.8	1	UniProt (A0A0D3D316)	Brassica oleracea var. botrytis
8	H (1H)	Large ribosomal subunit protein bL9c	polymer	220	25194.4	1	UniProt (A0A0D3EAI8)	Brassica oleracea var. botrytis	CL9
9	I (1I)	Large ribosomal subunit protein uL10c	polymer	170	18917.9	1	UniProt (A0A0D3AE97)	Brassica oleracea var. botrytis	50S ribosomal protein L10,chloroplastic,CL10
10	J (1J)	Large ribosomal subunit protein uL11m	polymer	156	17035.0	1	UniProt (A0A3P6F9L4)	Brassica oleracea var. botrytis
11	K (1K)	50S ribosomal protein L13	polymer	204	23166.9	1	UniProt (A0A0D3B978)	Brassica oleracea var. botrytis
12	L (1L)	uL14m	polymer	176	18926.3	1	UniProt (A0A0D3D9E7)	Brassica oleracea var. botrytis
13	M (1M)	Large ribosomal subunit protein uL15/eL18 domain-containing protein	polymer	281	31222.6	1	UniProt (A0A0D3BF13)	Brassica oleracea var. botrytis
14	N (1N)	Large ribosomal subunit protein uL16m\|	polymer	179	20186.9	1		Brassica oleracea var. botrytis
15	O (1O)	50S ribosomal protein L17	polymer	160	18612.5	1		Brassica oleracea var. botrytis
16	P (1P)	Ribosomal protein L18e/L15P domain-containing protein	polymer	114	12654.1	1	UniProt (A0A0D3DCH7)	Brassica oleracea var. botrytis
17	Q (1Q)	bL19m	polymer	233	26348.5	1	UniProt (A0A0D3B0P2)	Brassica oleracea var. botrytis
18	R (1R)	50S ribosomal protein L20	polymer	126	14749.1	1	UniProt (A0A3P6FUQ5)	Brassica oleracea var. botrytis
19	S (1S)	bL21m	polymer	270	30955.7	1		Brassica oleracea var. botrytis
20	T (1T)	Large ribosomal subunit protein uL22c	polymer	264	29793.8	1	UniProt (A0A0D3BFS0)	Brassica oleracea var. botrytis	50S ribosomal protein L22,chloroplastic
21	U (1U)	Large ribosomal subunit protein uL23m	polymer	180	19963.2	1	UniProt (A0A3P6FL36)	Brassica oleracea var. botrytis
22	V (1V)	KOW domain-containing protein	polymer	159	17547.4	1	UniProt (A0A3P6F7U6)	Brassica oleracea var. botrytis
23	W (1W)	bL25-2m	polymer	238	26239.5	1		Brassica oleracea var. botrytis
24	X (1X)	bL25m	polymer	271	29945.8	1	UniProt (A0A0D3BK40)	Brassica oleracea var. botrytis
25	Y (1Y)	50S ribosomal protein L27	polymer	156	17095.6	1	UniProt (A0A0D3B184)	Brassica oleracea var. botrytis
26	Z (1Z)	Large ribosomal subunit protein bL28m	polymer	215	24646.2	1	UniProt (A0A3P6BNQ4)	Brassica oleracea var. botrytis
27	AA (1a)	Cation-transporting P-type ATPase N-terminal domain-containing protein	polymer	144	16970.8	1	UniProt (A0A3P6EWC5)	Brassica oleracea var. botrytis
28	BA (1b)	Large ribosomal subunit protein uL30m	polymer	109	12347.5	1	UniProt (A0A0D3EB87)	Brassica oleracea var. botrytis
29	CA (1c)	bL31m	polymer	135	15785.3	1		Brassica oleracea var. botrytis
30	DA (1d)	Large ribosomal subunit protein bL32m	polymer	139	15228.8	1	UniProt (A0A3P6EXW7)	Brassica oleracea var. botrytis
31	EA (1e)	bL33m	polymer	106	12503.9	1		Brassica oleracea var. botrytis
32	FA (1f)	Large ribosomal subunit protein bL34m	polymer	146	16532.2	1	UniProt (A0A0D3CKG1)	Brassica oleracea var. botrytis
33	GA (1g)	50S ribosomal protein L35	polymer	162	18991.4	1	UniProt (A0A0D3AUD0)	Brassica oleracea var. botrytis
34	HA (1h)	Ribosomal protein	polymer	103	11452.4	1		Brassica oleracea var. botrytis
35	IA (1i)	mL40	polymer	247	27264.8	1	UniProt (A0A3P6DV95)	Brassica oleracea var. botrytis
36	JA (1j)	39S ribosomal protein L41-A, mitochondrial	polymer	90	10075.8	1	UniProt (A0A0D3B8D2)	Brassica oleracea var. botrytis
37	KA (1k)	Large ribosomal subunit protein mL43	polymer	119	13679.9	1	UniProt (A0A0D3DUE5)	Brassica oleracea var. botrytis
38	LA (1l)	Large ribosomal subunit protein mL46	polymer	239	27983.1	1	UniProt (A0A0D3B6Y5)	Brassica oleracea var. botrytis
39	MA (1m)	Large ribosomal subunit protein mL53	polymer	128	14567.6	1	UniProt (A0A3P6C832)	Brassica oleracea var. botrytis	39S ribosomal protein L53,mitochondrial
40	NA (1o)	Large ribosomal subunit protein mL54	polymer	125	13767.9	1	UniProt (A0A3P6AZ01)	Brassica oleracea var. botrytis
41	OA (1p)	MRPL25 domain-containing protein	polymer	130	15415.2	1	UniProt (A0A3P6FQK1)	Brassica oleracea var. botrytis
42	PA (1q)	mL60	polymer	78	8538.8	1	UniProt (A0A0D3BIE3)	Brassica oleracea var. botrytis
43	QA (1r)	mL80	polymer	167	18391.5	1	UniProt (A0A0D3D0H7)	Brassica oleracea var. botrytis
44	RA (1s)	mL87	polymer	181	20712.5	1	UniProt (A0A0D3DDW7)	Brassica oleracea var. botrytis
45	SA (1t)	Pentacotripeptide-repeat region of PRORP domain-containing protein	polymer	491	55947.3	1	UniProt (A0A3P6EEE6)	Brassica oleracea var. botrytis
46	TA (1u)	mL102	polymer	751	85127.2	1		Brassica oleracea var. botrytis
47	UA (1v)	mL104	polymer	514	58615.0	1		Brassica oleracea var. botrytis
48	VA (2)	18S rRNA	polymer	1766	570801.6	1		Brassica oleracea var. botrytis
49	WA (3)	5S rRNA	polymer	118	37992.6	1		Brassica oleracea var. botrytis
50	XA (5)	tRNA	polymer	77	24751.7	1		Brassica oleracea var. botrytis
51	YA (6)	mRNA	polymer	6	1900.2	1		Brassica oleracea var. botrytis
52	ZA (A)	Ribosomal protein S2	polymer	212	23743.5	1	UniProt (A0A0D3CN01)	Brassica oleracea var. botrytis
53	AB (B)	Small ribosomal subunit protein uS3m	polymer	554	64731.3	1	UniProt (A0A068BCX1)	Brassica oleracea var. botrytis	Ribosomal protein S3,mitochondrial
54	BB (C)	uS4m	polymer	362	43438.5	1		Brassica oleracea var. botrytis
55	CB (D)	S5 DRBM domain-containing protein	polymer	501	58296.7	1	UniProt (A0A0D3AS28)	Brassica oleracea var. botrytis
56	DB (E)	bS6m	polymer	138	16011.4	1	UniProt (A0A0D3CIR5)	Brassica oleracea var. botrytis
57	EB (F)	uS7m	polymer	157	17955.1	1		Brassica oleracea var. botrytis
58	FB (G)	uS8m	polymer	129	14874.1	1		Brassica oleracea var. botrytis
59	GB (H)	30S ribosomal protein S9	polymer	383	42328.4	1	UniProt (A0A3P6FWE0)	Brassica oleracea var. botrytis
60	HB (I)	Small ribosomal subunit protein uS10 domain-containing protein	polymer	228	25251.2	1	UniProt (A0A0D3CHA1)	Brassica oleracea var. botrytis
61	IB (J)	Ribosomal protein S11	polymer	304	33108.2	1	UniProt (A0A3P6EIC7)	Brassica oleracea var. botrytis
62	JB (K)	uS12m	polymer	125	14283.8	1		Brassica oleracea var. botrytis
63	KB (L)	uS13m	polymer	154	17398.3	1	UniProt (A0A0D3D1F0)	Brassica oleracea var. botrytis
64	LB (M)	Small ribosomal subunit protein uS14m	polymer	155	17928.8	1	UniProt (A0A3P6BZM6)	Brassica oleracea var. botrytis	Ribosomal protein S14,mitochondrial
65	MB (N)	Small ribosomal subunit protein uS15c	polymer	414	47211.2	1	UniProt (A0A0D3D1Z7)	Brassica oleracea var. botrytis	30S ribosomal protein S15,chloroplastic
66	NB (O)	30S ribosomal protein S16	polymer	136	15330.8	1	UniProt (A0A0D3ALM2)	Brassica oleracea var. botrytis
67	OB (P)	Small ribosomal subunit protein uS17c	polymer	110	12090.0	1	UniProt (A0A3P6EMJ2)	Brassica oleracea var. botrytis
68	PB (Q)	bS18m	polymer	237	27106.1	1		Brassica oleracea var. botrytis
69	QB (R)	uS19m	polymer	212	23675.2	1		Brassica oleracea var. botrytis
70	RB (S)	Ribosomal protein S21	polymer	100	11541.8	1	UniProt (A0A0D3AW14)	Brassica oleracea var. botrytis
71	SB (T)	30S ribosomal protein S31, mitochondrial	polymer	94	10524.6	1	UniProt (A0A0D3C0Z4)	Brassica oleracea var. botrytis
72	TB (U)	Small ribosomal subunit protein mS23	polymer	192	21903.5	1	UniProt (A0A3P6DYP2)	Brassica oleracea var. botrytis
73	UB (V)	mS26	polymer	193	23093.6	1		Brassica oleracea var. botrytis
74	VB (W)	Small ribosomal subunit protein mS29	polymer	483	54288.6	1	UniProt (A0A0D3CAV8)	Brassica oleracea var. botrytis
75	WB (X)	mS31/mS46	polymer	496	53476.2	1		Brassica oleracea var. botrytis
76	XB (Y)	MOSC domain-containing protein	polymer	102	11631.6	1	UniProt (A0A3P6ERU1)	Brassica oleracea var. botrytis
77	YB (Z)	mS34	polymer	153	16650.2	1		Brassica oleracea var. botrytis
78	ZB (a)	Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein	polymer	424	48577.3	1	UniProt (A0A3P6FE97)	Brassica oleracea var. botrytis
79	AC (b)	mS37	polymer	80	9227.9	1		Brassica oleracea var. botrytis
80	BC (c)	Small ribosomal subunit protein mS38	polymer	128	14562.2	1	UniProt (A0A3P6GL56)	Brassica oleracea var. botrytis
81	CC (d)	Small ribosomal subunit protein mS41 SAM domain-containing protein	polymer	110	12499.0	1	UniProt (A0A0D3DCJ8)	Brassica oleracea var. botrytis
82	DC (e)	mS45	polymer	383	44013.5	1	UniProt (A0A0D3BFU2)	Brassica oleracea var. botrytis
83	EC (f)	mS47	polymer	410	45518.7	1		Brassica oleracea var. botrytis
84	FC (h)	Adenylyl cyclase	polymer	384	43367.8	1	UniProt (A0A3P6FIH7)	Brassica oleracea var. botrytis
85	GC (i)	PROP1-like PPR domain-containing protein	polymer	725	82648.8	1		Brassica oleracea var. botrytis
86	HC (k)	RRM domain-containing protein	polymer	153	16017.0	1	UniProt (A0A3P6FEP3)	Brassica oleracea var. botrytis
87	AD, AE, AF, AG, AJ... (1, 2, 1D, 1j, 1q...)	MAGNESIUM ION	non-polymer		24.3	357	Chemie (MG) PubChem (888)
88	AH, AI, AR, BD, BH... (1, 2, 1B, 1E)	POTASSIUM ION	non-polymer		39.1	74	Chemie (K) PubChem (813)
89	TD (1)	CHLORAMPHENICOL	non-polymer		323.1	1	Chemie (CLM) PubChem (5959)
90	JO, KO (1d, 1h)	ZINC ION	non-polymer		65.4	2	Chemie (ZN) PubChem (32051)
91	AT (W)	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)

Sequence modifications

1F: 1 - 185 (UniProt: A0A068BF07)

PDB	External Database	Details
Leu 12	Ser 12	conflict
Leu 16	Pro 16	conflict
Leu 20	Pro 20	conflict
Tyr 22	His 22	conflict
Leu 31	Ser 31	conflict
Cys 57	Arg 57	conflict
Leu 106	Ser 106	conflict
Leu 110	Ser 110	conflict
Ile 160	Val 160	conflict
Leu 171	Pro 171	conflict

1H: 1 - 217 (UniProt: A0A0D3EAI8)

PDB	External Database	Details
Thr 19	Lys 19	conflict
Thr 24	Ser 24	conflict
Phe 69	Leu 69	conflict
Tyr 99	Phe 99	conflict
Glu 104	Val 107	conflict
Glu 105	Val 108	conflict
Val 106	His 109	conflict
Ser 108	Thr 111	conflict
Ile 160	Leu 163	conflict
Asp 173	Asn 176	conflict
Ala 184	Thr 187	conflict
Val 212	Leu 215	conflict

1I: 1 - 170 (UniProt: A0A0D3AE97)

PDB	External Database	Details
Lys 118	Glu 118	conflict
Gln 124	Lys 124	conflict

1J: 0 - 155 (UniProt: A0A3P6F9L4)

PDB	External Database	Details
Ser 78	Thr 79	conflict
Val 79	Phe 80	conflict
Thr 83	Ser 84	conflict

1M: 1 - 281 (UniProt: A0A0D3BF13)

PDB	External Database	Details
Ser 46	Pro 46	conflict
Ile 58	Met 58	conflict
Lys 127	Asn 127	conflict
Leu 249	Gln 249	conflict
Glu 280	Gly 280	conflict

1Z: 1 - 215 (UniProt: A0A3P6BNQ4)

PDB	External Database	Details
Asn 20	Thr 20	conflict
Ile 21	Leu 21	conflict
Glu 27	Gly 27	conflict
Thr 36	Ser 36	conflict
Ser 87	Arg 87	conflict
Tyr 126	Phe 126	conflict
Ala 133	Gln 133	conflict
Pro 148	Ala 148	conflict
Leu 154	Phe 154	conflict
Arg 174	Lys 174	conflict
Thr 175	Glu 175	conflict
Phe 176	Ala 176	conflict
Lys 178	Arg 178	conflict

1a: 1 - 144 (UniProt: A0A3P6EWC5)

PDB	External Database	Details
Thr 24	Ala 965	conflict
Gly 143	Ala 1084	conflict

1b: 1 - 109 (UniProt: A0A0D3EB87)

PDB	External Database	Details
Gln 17	Glu 17	conflict

1g: 12 - 173 (UniProt: A0A0D3AUD0)

PDB	External Database	Details
Ile 30	Leu 19	conflict
Arg 54	Thr 43	conflict
Asp 127	Tyr 116	conflict

1l: -5 - 233 (UniProt: A0A0D3B6Y5)

PDB	External Database	Details
Asp 25	Glu 31	conflict
Lys 126	Glu 132	conflict
Val 154	Leu 160	conflict
Met 179	Thr 185	conflict
Asp 201	Asn 207	conflict
Phe 220	Leu 226	conflict

1o: 2 - 126 (UniProt: A0A3P6AZ01)

PDB	External Database	Details
Cys 4	Tyr 3	conflict
Arg 63	Gly 62	conflict

1q: 5 - 82 (UniProt: A0A0D3BIE3)

PDB	External Database	Details
Ala 63	Ser 59	conflict

1r: -3 - 163 (UniProt: A0A0D3D0H7)

PDB	External Database	Details
Gly 5	-	insertion
Val 6	-	insertion
Leu 20	Phe 54	conflict
Lys 22	Asn 56	conflict
Asp 63	Glu 97	conflict
Pro 130	Ile 164	conflict
Pro 136	-	insertion
Val 137	-	insertion
Ala 138	-	insertion
Ala 139	-	insertion
Ala 140	-	insertion
Ala 141	Leu 170	conflict
Ala 144	Thr 173	conflict
Ala 145	Pro 174	conflict
Thr 149	-	insertion
Thr 150	-	insertion
Asp 151	-	insertion
Lys 152	Glu 178	conflict
Ala 156	Gln 182	conflict
Phe 157	Thr 183	conflict

B: 1 - 556 (UniProt: A0A068BCX1)

PDB	External Database	Details
Trp 22	Arg 22	conflict
Leu 172	Ser 170	conflict
Lys 202	Arg 200	conflict
Leu 296	Ser 294	conflict
Cys 512	Arg 510	conflict
Val 524	Ala 522	conflict
Leu 533	Ser 531	conflict

H: 48 - 430 (UniProt: A0A3P6FWE0)

PDB	External Database	Details
Ser 50	Pro 3	conflict
Ser 94	Asn 47	conflict

a: -4 - 419 (UniProt: A0A3P6FE97)

PDB	External Database	Details
Glu 186	Asp 191	conflict
Ala 239	Pro 244	conflict

h: 7 - 390 (UniProt: A0A3P6FIH7)

PDB	External Database	Details
-	Thr 50	deletion
-	Ile 51	deletion
-	Ser 52	deletion
-	Ser 53	deletion
-	Phe 54	deletion
-	His 55	deletion
-	Ala 56	deletion
-	Phe 57	deletion
-	Leu 58	deletion
-	Gln 59	deletion
-	Trp 60	deletion
-	Val 89	deletion
-	Phe 90	deletion
-	Leu 91	deletion
-	Tyr 92	deletion
-	Ala 93	deletion
Gln 152	Arg 162	conflict
Met 189	Leu 199	conflict
Met 190	Leu 200	conflict
Glu 203	Asp 213	conflict
Lys 330	Phe 340	conflict
Glu 331	Lys 341	conflict

k: 1 - 153 (UniProt: A0A3P6FEP3)

PDB	External Database	Details
Ser 23	Ala 23	conflict
Ile 38	Leu 38	conflict
Ser 46	Thr 46	conflict
Glu 50	Asp 50	conflict
Leu 51	Ile 51	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	86
Polymers	Total formula weight	3683094.3
Non-Polymers*	Number of molecules	435
Non-Polymers*	Total formula weight	12531.3
All*	Total formula weight	3695625.6

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)