9TRV
Structure of the Plant mitochondrial pre-initiation complex 1, (SSU,mtIF3)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S rRNA | polymer | 1611 | 521254.0 | 1 | Brassica oleracea var. botrytis | ||
| 2 | B (8) | Translation initiation factor IF3-1, mitochondrial | polymer | 520 | 58672.0 | 1 | UniProt (Q6NLP2) | Arabidopsis thaliana (thale cress) | AtIF3-1,AtINFC-1 |
| 3 | C (A) | Ribosomal protein S2 | polymer | 212 | 23743.5 | 1 | UniProt (A0A0D3CN01) | Brassica oleracea var. botrytis | |
| 4 | D (B) | Small ribosomal subunit protein uS3m | polymer | 554 | 64731.3 | 1 | UniProt (A0A068BCX1) | Brassica oleracea var. botrytis | Ribosomal protein S3,mitochondrial |
| 5 | E (C) | Ribosomal protein S4 | polymer | 362 | 43438.5 | 1 | UniProt (Q6YSL2) | Brassica oleracea var. botrytis | |
| 6 | F (D) | S5 DRBM domain-containing protein | polymer | 501 | 58296.7 | 1 | UniProt (A0A0D3AS28) | Brassica oleracea var. botrytis | |
| 7 | G (E) | bS6m | polymer | 138 | 16011.4 | 1 | UniProt (A0A0D3CIR5) | Brassica oleracea var. botrytis | |
| 8 | H (F) | uS7m,Small ribosomal subunit protein uS7m | polymer | 157 | 17955.1 | 1 | Brassica oleracea var. botrytis | ||
| 9 | I (G) | 40S ribosomal protein S15a | polymer | 129 | 14874.1 | 1 | UniProt (A0A398AJL3) | Brassica oleracea var. botrytis | |
| 10 | J (H) | 30S ribosomal protein S9 | polymer | 383 | 42328.4 | 1 | UniProt (A0A3P6FWE0) | Brassica oleracea var. botrytis | |
| 11 | K (I) | Small ribosomal subunit protein uS10 domain-containing protein | polymer | 228 | 25251.2 | 1 | UniProt (A0A0D3CHA1) | Brassica oleracea var. botrytis | |
| 12 | L (J) | Ribosomal protein S11 | polymer | 304 | 33108.2 | 1 | UniProt (A0A3P6EIC7) | Brassica oleracea var. botrytis | |
| 13 | M (K) | Small ribosomal subunit protein uS12m | polymer | 125 | 14294.8 | 1 | UniProt (P48857) | Brassica oleracea var. botrytis | Ribosomal protein S12,mitochondrial |
| 14 | N (L) | uS13m | polymer | 154 | 17398.3 | 1 | UniProt (A0A0D3D1F0) | Brassica oleracea var. botrytis | |
| 15 | O (M) | Small ribosomal subunit protein uS14m | polymer | 155 | 17928.8 | 1 | UniProt (A0A3P6BZM6) | Brassica oleracea var. botrytis | Ribosomal protein S14,mitochondrial |
| 16 | P (N) | Small ribosomal subunit protein uS15c | polymer | 414 | 47211.2 | 1 | UniProt (A0A0D3D1Z7) | Brassica oleracea var. botrytis | 30S ribosomal protein S15,chloroplastic |
| 17 | Q (O) | 30S ribosomal protein S16 | polymer | 136 | 15330.8 | 1 | UniProt (A0A0D3ALM2) | Brassica oleracea var. botrytis | |
| 18 | R (P) | Small ribosomal subunit protein uS17c | polymer | 110 | 12090.0 | 1 | UniProt (A0A3P6EMJ2) | Brassica oleracea var. botrytis | |
| 19 | S (Q) | Small ribosomal subunit protein bS18c | polymer | 237 | 27106.1 | 1 | UniProt (A0A078FCZ9) | Brassica oleracea var. botrytis | 30S ribosomal protein S18,chloroplastic |
| 20 | T (R) | Small ribosomal subunit protein uS19m | polymer | 212 | 23675.2 | 1 | UniProt (P39697) | Brassica oleracea var. botrytis | 40S ribosomal protein S19,mitochondrial |
| 21 | U (S) | Ribosomal protein S21 | polymer | 100 | 11541.8 | 1 | UniProt (A0A0D3AW14) | Brassica oleracea var. botrytis | |
| 22 | V (T) | 30S ribosomal protein S31, mitochondrial | polymer | 94 | 10524.6 | 1 | UniProt (A0A0D3C0Z4) | Brassica oleracea var. botrytis | |
| 23 | W (U) | mS23 | polymer | 192 | 21903.5 | 1 | UniProt (A0A3P6DYP2) | Brassica oleracea var. botrytis | |
| 24 | X (V) | mS26 | polymer | 193 | 23093.6 | 1 | UniProt (A0ABQ7YPD6) | Brassica oleracea var. botrytis | |
| 25 | Y (W) | Small ribosomal subunit protein mS29 | polymer | 483 | 54288.6 | 1 | UniProt (A0A0D3CAV8) | Brassica oleracea var. botrytis | |
| 26 | Z (X) | BnaC06g06470D protein | polymer | 496 | 53476.2 | 1 | UniProt (A0A078I5F5) | Brassica oleracea var. botrytis | |
| 27 | AA (Y) | MOSC domain-containing protein | polymer | 102 | 11631.6 | 1 | UniProt (A0A3P6ERU1) | Brassica oleracea var. botrytis | |
| 28 | BA (Z) | Mitochondrial 28S ribosomal protein S34 | polymer | 153 | 16650.2 | 1 | UniProt (A0A8S9KXA0) | Brassica oleracea var. botrytis | |
| 29 | CA (a) | Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein | polymer | 424 | 48589.3 | 1 | UniProt (A0A3P6FE97) | Brassica oleracea var. botrytis | |
| 30 | DA (b) | IMS import disulfide relay-system CHCH-CHCH-like Cx9C domain-containing protein | polymer | 80 | 9227.9 | 1 | UniProt (A8MRX3) | Brassica oleracea var. botrytis | |
| 31 | EA (c) | Small ribosomal subunit protein mS38 | polymer | 128 | 14562.2 | 1 | UniProt (A0A3P6GL56) | Brassica oleracea var. botrytis | |
| 32 | FA (d) | IGR domain-containing protein | polymer | 110 | 12499.0 | 1 | UniProt (A0A0D3DCJ8) | Brassica oleracea var. botrytis | |
| 33 | GA (e) | mS45 | polymer | 383 | 44013.5 | 1 | UniProt (A0A0D3BFU2) | Brassica oleracea var. botrytis | |
| 34 | HA (f) | mS47 | polymer | 410 | 45518.7 | 1 | UniProt (A0ABQ7BUT9) | Brassica oleracea var. botrytis | |
| 35 | IA (g) | Small ribosomal subunit protein mS81 (rPPR8) | polymer | 668 | 75398.3 | 1 | UniProt (Q8LPF1) | Brassica oleracea var. botrytis | Pentatricopeptide repeat-containing protein At5g15980,mitochondrial |
| 36 | JA (h) | (rape) hypothetical protein | polymer | 384 | 43364.8 | 1 | UniProt (A0ABQ7ZIA1) | Brassica oleracea var. botrytis | |
| 37 | KA (i) | PROP1-like PPR domain-containing protein | polymer | 725 | 82648.8 | 1 | UniProt (A0A654ECT9) | Brassica oleracea var. botrytis | |
| 38 | LA (k) | Small ribosomal subunit protein mS86 | polymer | 155 | 15968.0 | 1 | UniProt (Q9FZ84) | Brassica oleracea var. botrytis | AtRBG6,Glycine-rich RNA-binding protein 6,mitochondrial,AtGR-RBP6 |
| 39 | MA (l) | Small ribosomal subunit protein mS80 (rPPR6) | polymer | 576 | 63912.7 | 1 | UniProt (P0C896) | Brassica oleracea var. botrytis | Pentatricopeptide repeat-containing protein At3g02650,mitochondrial |
| 40 | NA (W) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence modifications
B: 1 - 556 (UniProt: A0A068BCX1)
H: 48 - 430 (UniProt: A0A3P6FWE0)
Q: 26 - 262 (UniProt: A0A078FCZ9)
k: 1 - 155 (UniProt: Q9FZ84)
| PDB | External Database | Details |
|---|---|---|
| Trp 22 | Arg 22 | conflict |
| Ile 62 | Leu 62 | conflict |
| Leu 172 | Ser 170 | conflict |
| Lys 202 | Arg 200 | conflict |
| Leu 296 | Ser 294 | conflict |
| Cys 512 | Arg 510 | conflict |
| Val 524 | Ala 522 | conflict |
| Leu 533 | Ser 531 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 50 | Pro 3 | conflict |
| Ser 94 | Asn 47 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ile 250 | Val 225 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Lys 9 | Arg 9 | conflict |
| Met 20 | Leu 20 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 39 |
| Total formula weight | 1753513.2 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 507.2 | |
| All* | Total formula weight | 1754020.4 |
