9TQA
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Large ribosomal subunit protein bL33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) | Escherichia coli | 50S ribosomal protein L33 |
| 2 | B (1) | Large ribosomal subunit protein bL34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) | Escherichia coli | 50S ribosomal protein L34 |
| 3 | C (2) | Large ribosomal subunit protein bL35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) | Escherichia coli | 50S ribosomal protein L35,Ribosomal protein A |
| 4 | D (3) | Large ribosomal subunit protein bL36A | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) | Escherichia coli | 50S ribosomal protein L36,Ribosomal protein B |
| 5 | E (4) | Large ribosomal subunit protein bL31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) | Escherichia coli | 50S ribosomal protein L31 |
| 6 | F (A) | 16S rRNA | polymer | 1544 | 500523.8 | 1 | GenBank (2971070070) | Escherichia coli | |
| 7 | G (B) | Small ribosomal subunit protein uS2 | polymer | 241 | 26781.7 | 1 | UniProt (P0A7V0) | Escherichia coli | 30S ribosomal protein S2 |
| 8 | H (C) | Small ribosomal subunit protein uS3 | polymer | 233 | 26031.3 | 1 | UniProt (P0A7V3) | Escherichia coli | 30S ribosomal protein S3 |
| 9 | I (D) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) | Escherichia coli | 30S ribosomal protein S4 |
| 10 | J (E) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) | Escherichia coli | 30S ribosomal protein S5 |
| 11 | K (F) | Small ribosomal subunit protein bS6, fully modified isoform | polymer | 135 | 15727.5 | 1 | UniProt (P02358) | Escherichia coli | |
| 12 | L (G) | Small ribosomal subunit protein uS7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) | Escherichia coli | 30S ribosomal protein S7 |
| 13 | M (H) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (P0A7W7) | Escherichia coli | 30S ribosomal protein S8 |
| 14 | N (I) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (P0A7X3) | Escherichia coli | 30S ribosomal protein S9 |
| 15 | O (J) | Small ribosomal subunit protein uS10 | polymer | 103 | 11755.6 | 1 | UniProt (P0A7R5) | Escherichia coli | 30S ribosomal protein S10,Transcription termination/antitermination protein NusE |
| 16 | P (K) | Small ribosomal subunit protein uS11 | polymer | 129 | 13872.0 | 1 | UniProt (P0A7R9) | Escherichia coli | 30S ribosomal protein S11 |
| 17 | Q (L) | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (P0A7S3) | Escherichia coli | 30S ribosomal protein S12 |
| 18 | R (M) | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 1 | UniProt (P0A7S9) | Escherichia coli | 30S ribosomal protein S13 |
| 19 | S (N) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (P0AG59) | Escherichia coli | 30S ribosomal protein S14 |
| 20 | T (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (P0ADZ4) | Escherichia coli | 30S ribosomal protein S15 |
| 21 | U (P) | Small ribosomal subunit protein bS16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) | Escherichia coli | 30S ribosomal protein S16 |
| 22 | V (Q) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) | Escherichia coli | 30S ribosomal protein S17 |
| 23 | W (R) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (P0A7T7) | Escherichia coli | 30S ribosomal protein S18 |
| 24 | X (S) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 1 | UniProt (P0A7U3) | Escherichia coli | 30S ribosomal protein S19 |
| 25 | Y (T) | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) | Escherichia coli | 30S ribosomal protein S20 |
| 26 | Z (U) | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) | Escherichia coli | 30S ribosomal protein S21 |
| 27 | AA (X) | mRNA | polymer | 10 | 3210.0 | 1 | Escherichia coli | ||
| 28 | BA (Y) | A-site Val-tRNA^Val | polymer | 76 | 24544.7 | 1 | GenBank (1845258627) | Escherichia coli | |
| 29 | CA (Z) | P-site tRNA^fMet | polymer | 78 | 25229.2 | 1 | Escherichia coli | ||
| 30 | DA (a) | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli | ||
| 31 | EA (b) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 32 | FA (c) | Large ribosomal subunit protein uL2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) | Escherichia coli | 50S ribosomal protein L2 |
| 33 | GA (d) | Large ribosomal subunit protein uL3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) | Escherichia coli | 50S ribosomal protein L3 |
| 34 | HA (e) | Large ribosomal subunit protein uL4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) | Escherichia coli | 50S ribosomal protein L4 |
| 35 | IA (f) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) | Escherichia coli | 50S ribosomal protein L5 |
| 36 | JA (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) | Escherichia coli | 50S ribosomal protein L6 |
| 37 | KA (h) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) | Escherichia coli | 50S ribosomal protein L9 |
| 38 | LA (i) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) | Escherichia coli | 50S ribosomal protein L13 |
| 39 | MA (j) | Large ribosomal subunit protein uL14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) | Escherichia coli | 50S ribosomal protein L14 |
| 40 | NA (k) | Large ribosomal subunit protein uL15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) | Escherichia coli | 50S ribosomal protein L15 |
| 41 | OA (l) | Large ribosomal subunit protein uL16 | polymer | 136 | 15343.3 | 1 | UniProt (P0ADY7) | Escherichia coli | 50S ribosomal protein L16 |
| 42 | PA (m) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) | Escherichia coli | 50S ribosomal protein L17 |
| 43 | QA (n) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) | Escherichia coli | 50S ribosomal protein L18 |
| 44 | RA (o) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) | Escherichia coli | 50S ribosomal protein L19 |
| 45 | SA (p) | Large ribosomal subunit protein bL20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) | Escherichia coli | 50S ribosomal protein L20 |
| 46 | TA (q) | Large ribosomal subunit protein bL21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) | Escherichia coli | 50S ribosomal protein L21 |
| 47 | UA (r) | Large ribosomal subunit protein uL22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) | Escherichia coli | 50S ribosomal protein L22 |
| 48 | VA (s) | Large ribosomal subunit protein uL23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) | Escherichia coli | 50S ribosomal protein L23 |
| 49 | WA (t) | Large ribosomal subunit protein uL24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) | Escherichia coli | 50S ribosomal protein L24 |
| 50 | XA (u) | Large ribosomal subunit protein bL25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) | Escherichia coli | 50S ribosomal protein L25 |
| 51 | YA (v) | Large ribosomal subunit protein bL27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) | Escherichia coli | 50S ribosomal protein L27 |
| 52 | ZA (w) | Large ribosomal subunit protein bL28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) | Escherichia coli | 50S ribosomal protein L28 |
| 53 | AB (x) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) | Escherichia coli | 50S ribosomal protein L29 |
| 54 | BB (y) | Large ribosomal subunit protein uL30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) | Escherichia coli | 50S ribosomal protein L30 |
| 55 | CB (z) | Large ribosomal subunit protein bL32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) | Escherichia coli | 50S ribosomal protein L32 |
| 56 | DB, EB (3, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 57 | FB (A) | SPECTINOMYCIN | non-polymer | 332.4 | 1 | Chemie (SCM) PubChem (16757734) PubChem (25008033) PubChem (25008035) PubChem (25008036) PubChem (44120110) PubChem (53298596) PubChem (15541) PubChem (71752167) PubChem (7048796) PubChem (124771612) PubChem (59098412) PubChem (71306861) PubChem (71774977) PubChem (73265186) PubChem (75534862) PubChem (91393002) PubChem (93474248) PubChem (95566334) PubChem (95566335) PubChem (95566336) PubChem (97050499) PubChem (117072393) PubChem (117986677) PubChem (2021) PubChem (124304444) PubChem (124352394) PubChem (124771609) PubChem (124771610) PubChem (124771611) PubChem (5702260) PubChem (6604362) PubChem (6604671) PubChem (7048798) PubChem (7067793) PubChem (126963502) PubChem (129010452) PubChem (11865469) PubChem (11865471) PubChem (11865473) PubChem (11865475) PubChem (15558351) PubChem (132067192) PubChem (134693173) PubChem (137704781) PubChem (137705153) PubChem (140326108) PubChem (146157559) PubChem (146247383) PubChem (162973090) PubChem (162973091) PubChem (164773707) | |||
| 58 | AC, AE, AF, AG, AH... (A, a, Z, b, c...) | MAGNESIUM ION | non-polymer | 24.3 | 238 | Chemie (MG) PubChem (888) | |||
| 59 | AD (Y) | VALINE | non-polymer | 117.1 | 1 | Chemie (VAL) PubChem (1182) PubChem (6287) PubChem (71563) | |||
| 60 | DK, EK, FK, GK, HK... (a) | POTASSIUM ION | non-polymer | 39.1 | 6 | Chemie (K) PubChem (813) | |||
| 61 | AL, AM, BL, BM, CL... (F, h, G, i, H...) | water | water | 18.0 | 8552 | Chemie (HOH) |
Sequence modifications
A: 1 - 1542 (GenBank: 2971070070)
K: 1 - 129 (UniProt: P0A7R9)
| PDB | External Database | Details |
|---|---|---|
| G 1448 | - | insertion |
| C 1454 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asn 119 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 55 |
| Total formula weight | 2194166.9 | |
| Non-Polymers* | Number of molecules | 248 |
| Total formula weight | 6599.5 | |
| All* | Total formula weight | 2200766.4 |
