9T56
Cryo-EM structure of ISCro4-DBL-TBL-tDNA-dDNA synaptic complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | ISCro4 transposase | polymer | 341 | 38131.7 | 4 | UniProt (D2TGM5) | Citrobacter rodentium ICC168 | |
| 2 | E (E) | Target-binding loop (TBL) RNA | polymer | 111 | 35682.1 | 1 | GenBank (282947233) | Citrobacter rodentium ICC168 | |
| 3 | F (F) | Donor-binding loop (DBL) RNA | polymer | 79 | 25278.9 | 1 | Citrobacter rodentium ICC168 | ||
| 4 | G (G) | target DNA (tRNA) top strand | polymer | 38 | 11616.5 | 1 | Citrobacter rodentium ICC168 | ||
| 5 | H (H) | target DNA (tDNA) bottom strand | polymer | 38 | 11776.6 | 1 | Citrobacter rodentium ICC168 | ||
| 6 | I (I) | donor DNA (dDNA) top strand | polymer | 44 | 13562.7 | 1 | Citrobacter rodentium ICC168 | ||
| 7 | J (J) | donor DNA (dDNA) bottom strand | polymer | 44 | 13531.7 | 1 | Citrobacter rodentium ICC168 | ||
| 8 | K, L (G, I) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) |
Sequence modifications
A, B, C, D: 1 - 326 (UniProt: D2TGM5)
E: 1 - 104 (GenBank: 282947233)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
| Ser 327 | - | expression tag |
| Ser 328 | - | expression tag |
| Gly 329 | - | expression tag |
| Ser 330 | - | expression tag |
| Leu 331 | - | expression tag |
| Glu 332 | - | expression tag |
| His 333 | - | expression tag |
| His 334 | - | expression tag |
| His 335 | - | expression tag |
| His 336 | - | expression tag |
| His 337 | - | expression tag |
| His 338 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| G -2 | - | expression tag |
| G -1 | - | expression tag |
| G 0 | - | expression tag |
| U 105 | - | expression tag |
| U 106 | - | expression tag |
| U 107 | - | expression tag |
| U 108 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 263975.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 48.6 | |
| All* | Total formula weight | 264024.0 |






