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9T4B

Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1) R89S mutant in complex with 1,5-(PCP)-IP5 (PCP-IP8)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Diphosphoinositol polyphosphate phosphohydrolase 1polymer14817045.31UniProt (O95989)Homo sapiens (human)DIPP-1,Diadenosine hexaphosphate hydrolase,Ap6A hydrolase,Endopolyphosphatase,Nucleoside diphosphate-linked moiety X motif 3,Nudix motif 3,m7GpppN-mRNA hydrolase,m7GpppX diphosphatase
2B
(A)
{[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)non-polymer816.01Chemie (4WZ)
3C
(A)
1,2-ETHANEDIOLnon-polymer62.11Chemie (EDO)
4D, E, G, H
(A)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
PubChem (888)
5F
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
PubChem (312)
6I
(A)
waterwater18.0109Chemie (HOH)
Sequence modifications
A: 1 - 148 (UniProt: O95989)
PDBExternal DatabaseDetails
Ser 89Arg 89engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight17045.3
Non-Polymers*Number of molecules7
Total formula weight1010.8
All*Total formula weight18056.0
*Water molecules are not included.

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PDB entries from 2026-06-10

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