9T45
Crystal Structure of the NlpC/P60 Peptidase YkfC C200A Mutant from Bacillus subtilis with Bound Pentapeptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase | polymer | 304 | 34102.0 | 4 | UniProt (O35010) | Bacillus subtilis subsp. subtilis str. 168 | Cell wall endopeptidase YkfC |
| 2 | E, F, G, H (E, F, G, H) | Pentapeptide (ALA-DGL-LYS-DAL-DAL) | polymer | 5 | 489.5 | 4 | synthetic construct | ||
| 3 | I, J, L, M, N... (A, B, C, D) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) PubChem (32051) | |||
| 4 | K (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 5 | R, S, T, U, V... (A, B, C, D, E...) | water | water | 18.0 | 40 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 1 - 296 (UniProt: O35010)
| PDB | External Database | Details |
|---|---|---|
| Ala 200 | Cys 200 | engineered mutation |
| Leu 297 | - | expression tag |
| Glu 298 | - | expression tag |
| His 299 | - | expression tag |
| His 300 | - | expression tag |
| His 301 | - | expression tag |
| His 302 | - | expression tag |
| His 303 | - | expression tag |
| His 304 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 138366.1 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 615.4 | |
| All* | Total formula weight | 138981.5 |
