9T0J

Spraguea lophii ribosome dimer, conformation 2.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, BC (L50, K50)	RNA 23S	polymer	2618	849039.8	2		Spraguea lophii 42_110
2	B, CC (S60, R60)	RNA 16S	polymer	1368	444812.5	2		Spraguea lophii 42_110
3	C, DC (D, E)	60S ribosomal protein L12	polymer	164	17547.6	2	UniProt (S7W9J9) Pfam (PF03946) Pfam (PF00298)	Spraguea lophii 42_110
4	D, EC (LGG, KGG)	Ribosomal protein L34	polymer	106	12020.3	2	UniProt (S7W7C6) Pfam (PF01199)	Spraguea lophii 42_110
5	E, FC (SB0, RB0)	40S ribosomal protein S1	polymer	230	25934.7	2		Spraguea lophii 42_110
6	F, GC (SC0, RC0)	Small ribosomal subunit protein uS5	polymer	248	27241.5	2	UniProt (S7W7R5) Pfam (PF00333) Pfam (PF03719)	Spraguea lophii 42_110	40S ribosomal protein S2
7	G, HC (L70, K70)	RNA 5S	polymer	119	38356.8	2		Spraguea lophii 42_110
8	H, IC (A, B)	Elongation factor 2	polymer	847	94350.4	2	UniProt (S7XLX5) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679)	Spraguea lophii 42_110
9	I, JC (L, K)	60S ribosomal protein L10a	polymer	210	24426.6	2	UniProt (S7W9N5) Pfam (PF00687)	Spraguea lophii 42_110
10	J, KC (M, N)	Large ribosomal subunit protein uL10	polymer	269	30223.3	2	UniProt (S7WBY5) Pfam (PF00466) Pfam (PF17777)	Spraguea lophii 42_110
11	K, LC (LMM, KMM)	Ubiquitin	polymer	127	14563.9	2	UniProt (S7XSQ3) Pfam (PF00240) Pfam (PF01020)	Spraguea lophii 42_110
12	L, MC (SBB, RBB)	40S ribosomal protein S27	polymer	82	9189.9	2		Spraguea lophii 42_110
13	M, NC (SAA, RAA)	40S ribosomal protein S26	polymer	102	11974.1	2	UniProt (S7W9M7) Pfam (PF01283)	Spraguea lophii 42_110
14	N, OC (LOO, KOO)	60S ribosomal protein L44	polymer	104	11990.5	2	UniProt (S7XL20) Pfam (PF00935)	Spraguea lophii 42_110
15	O, PC (LPP, KPP)	60S ribosomal protein L37a	polymer	89	10151.1	2		Spraguea lophii 42_110
16	P, QC (LJJ, KJJ)	60S ribosomal protein L37	polymer	92	10517.7	2		Spraguea lophii 42_110
17	Q, RC (LA0, LA02)	60S ribosomal protein L8	polymer	246	27005.5	2		Spraguea lophii 42_110
18	R, SC (LAA, KAA)	60S ribosomal protein L15	polymer	147	16609.5	2		Spraguea lophii 42_110
19	S, TC (LB0, KB0)	60S ribosomal protein L3	polymer	392	44320.6	2	UniProt (S7XFB1) Pfam (PF00297)	Spraguea lophii 42_110
20	T, UC (LC0, KC0)	Large ribosomal subunit protein uL4	polymer	328	37241.6	2	UniProt (S7WCM8) Pfam (PF00573)	Spraguea lophii 42_110	60S ribosomal protein L4
21	U, VC (LCC, KCC)	60S ribosomal protein L3	polymer	110	12484.4	2	UniProt (S7WAY0) Pfam (PF01248)	Spraguea lophii 42_110
22	V, WC (LDD, KDD)	60S ribosomal protein L31	polymer	110	12854.2	2	UniProt (S7XW48) Pfam (PF01198)	Spraguea lophii 42_110
23	W, XC (LE0, KE0)	60S ribosomal protein L6	polymer	171	20220.1	2	UniProt (S7W5S3)	Spraguea lophii 42_110
24	X, YC (LEE, KEE)	Large ribosomal subunit protein eL32	polymer	139	16076.0	2	UniProt (S7XKE0) Pfam (PF01655)	Spraguea lophii 42_110
25	Y, ZC (LF0, KF0)	60S ribosomal protein L7	polymer	235	27935.6	2	UniProt (S7W946) Pfam (PF00327)	Spraguea lophii 42_110
26	AD, Z (LFF, KFF)	60S ribosomal protein L35a	polymer	111	12758.0	2	UniProt (S7W662) Pfam (PF01247)	Spraguea lophii 42_110
27	AA, BD (LG0, KG0)	60S ribosomal protein L8	polymer	206	23605.0	2	UniProt (S7XU63) Pfam (PF01248)	Spraguea lophii 42_110
28	BA, CD (LH0, KH0)	60S ribosomal protein L9	polymer	187	21538.2	2	UniProt (S7XRZ9) Pfam (PF00347)	Spraguea lophii 42_110
29	CA, DD (LHH, KHH)	60S Ribosomal L29 protein	polymer	119	14183.9	2		Spraguea lophii 42_110
30	DA, ED (LI0, KI0)	S60 ribosomal protein L10	polymer	218	25142.3	2	UniProt (S7WBF8) Pfam (PF00252)	Spraguea lophii 42_110
31	EA, FD (LII, KII)	60S ribosomal protein L36	polymer	98	11350.7	2	UniProt (S7WED1) Pfam (PF01158)	Spraguea lophii 42_110
32	FA, GD (LJ0, KJ0)	60S ribosomal protein L11	polymer	171	19485.0	2	UniProt (S7WB69) Pfam (PF00281) Pfam (PF00673)	Spraguea lophii 42_110
33	GA, HD (LL0, KL0)	60S ribosomal protein L13	polymer	165	19513.1	2	UniProt (S7XVM9) Pfam (PF01294)	Spraguea lophii 42_110
34	HA, ID (LLL, KLL)	60S ribosomal protein L39	polymer	52	6227.6	2	UniProt (S7XTP1) Pfam (PF00832)	Spraguea lophii 42_110
35	IA, JD (LM0, KM0)	60S ribosomal protein L14	polymer	122	14158.4	2	UniProt (S7XVN9)	Spraguea lophii 42_110
36	JA, KD (LN0, KN0)	Ribosomal protein L15	polymer	204	24200.4	2	UniProt (S7W7A2) Pfam (PF00827)	Spraguea lophii 42_110
37	KA, LD (LO0, KO0)	Ribosomal protein L13A	polymer	198	22885.1	2	UniProt (S7XUD8) Pfam (PF00572)	Spraguea lophii 42_110
38	LA, MD (LP0, KP0)	60S ribosomal protein L17	polymer	167	19114.5	2	UniProt (S7WDR4) Pfam (PF00237)	Spraguea lophii 42_110
39	MA, ND (LQ0, KQ0)	60S ribosomal protein L18	polymer	183	21378.1	2	UniProt (S7WAI2) Pfam (PF17135)	Spraguea lophii 42_110
40	NA, OD (LR0, KR0)	60S ribosomal protein L19	polymer	168	19550.0	2	UniProt (S7WBY9) Pfam (PF01280) Pfam (PF25476)	Spraguea lophii 42_110
41	OA, PD (LS0, KS0)	60S ribosomal protein L20	polymer	171	20043.4	2	UniProt (S7WAG4) Pfam (PF01775)	Spraguea lophii 42_110
42	PA, QD (LT0, KT0)	60s ribosomal protein L21	polymer	158	18344.4	2	UniProt (S7W8F6) Pfam (PF01157)	Spraguea lophii 42_110
43	QA, RD (LU0, KU0)	Large ribosomal subunit protein eL22	polymer	113	12854.8	2	UniProt (S7W958) Pfam (PF01776)	Spraguea lophii 42_110
44	RA, SD (LV0, KV0)	Ribosomal protein L23	polymer	142	15240.0	2	UniProt (S7XLC4) Pfam (PF00238)	Spraguea lophii 42_110
45	SA, TD (LW0, KW0)	Ribosomal protein L24E	polymer	131	15342.2	2	UniProt (S7XSY2) Pfam (PF01246)	Spraguea lophii 42_110
46	TA, UD (LX0, KX0)	60S ribosomal protein L23a	polymer	113	12557.9	2	UniProt (S7XFW8) Pfam (PF00276)	Spraguea lophii 42_110
47	UA, VD (LY0, KY0)	60S ribosomal protein L26	polymer	131	15026.9	2	UniProt (S7W884) Pfam (PF16906) Pfam (PF00467)	Spraguea lophii 42_110
48	VA, WD (LZ0, KZ0)	60S ribosomal protein L27	polymer	153	18247.8	2	UniProt (S7XU08) Pfam (PF01777)	Spraguea lophii 42_110
49	WA, XD (MD1, ND1)	DNL-type domain-containing protein MD1	polymer	151	17595.1	2	UniProt (S7W5K5) Pfam (PF05907)	Spraguea lophii 42_110
50	XA, YD (SA0, RA0)	Small ribosomal subunit protein uS2	polymer	233	26201.2	2	UniProt (S7W8R1) Pfam (PF00318)	Spraguea lophii 42_110
51	YA, ZD (SCC, RCC)	40S ribosomal protein S28	polymer	65	7288.5	2		Spraguea lophii 42_110
52	AE, ZA (SE0, RE0)	40S ribosomal protein S4	polymer	280	31442.2	2	UniProt (S7XG51) Pfam (PF08071) Pfam (PF00900) Pfam (PF16121)	Spraguea lophii 42_110
53	AB, BE (SEE, REE)	40S ribosomal protein S30	polymer	60	6816.0	2		Spraguea lophii 42_110
54	BB, CE (SGG, RGG)	Guanine nucleotide binding protein beta subunit	polymer	326	36182.8	2	UniProt (S7XVG3) Pfam (PF00400)	Spraguea lophii 42_110
55	CB, DE (SI0, RI0)	40S ribosomal protein S8	polymer	173	19912.1	2	UniProt (S7XGW2) Pfam (PF01201)	Spraguea lophii 42_110
56	DB, EE (SJ0, RJ0)	40S ribosomal protein S9	polymer	184	21366.0	2	UniProt (S7W8E3) Pfam (PF01479)	Spraguea lophii 42_110
57	EB, FE (SK0, RK0)	40S ribosomal protein S10	polymer	107	12702.5	2	UniProt (S7XU48) Pfam (PF03501)	Spraguea lophii 42_110
58	FB, GE (SL0, RL0)	Small ribosomal subunit protein uS17	polymer	155	18109.4	2	UniProt (S7W8R0) Pfam (PF16205) Pfam (PF00366)	Spraguea lophii 42_110	40S ribosomal protein S11
59	GB, HE (SM0, RM0)	40S ribosomal protein S12	polymer	130	14343.7	2	UniProt (S7W7D2) Pfam (PF01248)	Spraguea lophii 42_110
60	HB, IE (SN0, RN0)	40S ribosomal protein S13	polymer	143	16192.0	2	UniProt (S7XVZ9) Pfam (PF08069)	Spraguea lophii 42_110
61	IB, JE (SO0, RO0)	Small ribosomal subunit protein uS11	polymer	135	14708.0	2	UniProt (S7W6I0) Pfam (PF00411)	Spraguea lophii 42_110	40S ribosomal protein S14
62	JB, KE (SP0, RP0)	Ribosomal protein S19	polymer	163	18514.6	2	UniProt (S7XKY9) Pfam (PF00203)	Spraguea lophii 42_110
63	KB, LE (SQ0, RQ0)	40S ribosomal protein S16	polymer	143	16415.1	2	UniProt (S7WDU9) Pfam (PF00380)	Spraguea lophii 42_110
64	LB, ME (SR0, RR0)	40S ribosomal protein S17	polymer	120	14055.3	2		Spraguea lophii 42_110
65	MB, NE (SS0, RS0)	40S ribosomal protein S18	polymer	160	18171.1	2	UniProt (S7XJA1) Pfam (PF00416)	Spraguea lophii 42_110
66	NB, OE (ST0, RT0)	40S Ribosomal protein S19	polymer	143	16603.3	2	UniProt (S7W7P5) Pfam (PF01090)	Spraguea lophii 42_110
67	OB, PE (SU0, RU0)	40S ribosomal protein S20	polymer	119	13777.1	2	UniProt (S7W986) Pfam (PF00338)	Spraguea lophii 42_110
68	PB, QE (SV0, RV0)	Ribosomal protein S21E	polymer	67	7768.9	2	UniProt (S7WAC1) Pfam (PF01249)	Spraguea lophii 42_110
69	QB, RE (SX0, RX0)	40S ribosomal protein uS12	polymer	141	15822.7	2		Spraguea lophii 42_110
70	RB, SE (SY0, RY0)	40s ribosomal protein s24	polymer	146	17189.9	2	UniProt (S7W8J5) Pfam (PF01282)	Spraguea lophii 42_110
71	SB, TE (SZ0, RZ0)	40S ribosomal protein S25	polymer	128	14777.1	2	UniProt (S7WAV8) Pfam (PF03297)	Spraguea lophii 42_110
72	TB, UE (LD0, KD0)	60S ribosomal protein L5	polymer	291	33892.3	2	UniProt (S7XIG7) Pfam (PF17144) Pfam (PF14204)	Spraguea lophii 42_110
73	UB, VE (SDD, RDD)	40S ribosomal protein S29	polymer	65	7891.2	2	UniProt (S7XJB1) Pfam (PF00253)	Spraguea lophii 42_110
74	VB, WE (SD0, RD0)	40S ribosomal protein S3	polymer	242	27516.5	2	UniProt (S7WAW0) Pfam (PF00189)	Spraguea lophii 42_110
75	WB, XE (SG0, RG0)	40S ribosomal protein S6	polymer	230	26238.9	2		Spraguea lophii 42_110
76	XB, YE (SH0, RH0)	40S ribosomal protein S7	polymer	164	19132.0	2	UniProt (S7XV29) Pfam (PF01251)	Spraguea lophii 42_110
77	YB, ZE (SW0, RW0)	40S ribosomal protein S15A	polymer	128	14620.1	2	UniProt (S7XK92) Pfam (PF00410)	Spraguea lophii 42_110
78	AF, ZB (SF0, RF0)	40S ribosomal protein S5	polymer	195	21982.8	2	UniProt (S7W4M9) Pfam (PF00177)	Spraguea lophii 42_110
79	AC, BF (SFF, RFF)	Ubiquitin/40s ribosomal protein S27a fusion	polymer	150	16937.8	2	UniProt (S7W9X5) Pfam (PF00240) Pfam (PF01599)	Spraguea lophii 42_110
80	CF, DF, EF, FF, GF... (LGG, LMM, SBB, SAA, LOO...)	ZINC ION	non-polymer		65.4	18	Chemie (ZN) PubChem (32051)

Contents of the asymmetric unit

Polymers	Number of chains	158
	Total formula weight	5628004.0
Non-Polymers*	Number of molecules	18
	Total formula weight	1177.4
All*	Total formula weight	5629181.3

*Water molecules are not included.