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9SYR

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L1)
28S rRNApolymer50701641159.91Homo sapiens
2B
(Lc)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
3C
(Ld)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
4D
(Le)
Large ribosomal subunit protein eL6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)60S ribosomal protein L6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
5E
(Lf)
Large ribosomal subunit protein uL13polymer19923202.91UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,60S ribosomal protein L13a
6F
(Lg)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
7G
(Lh)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
8H
(Li)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Pfam (PF25476)
Homo sapiens (human)Large ribosomal subunit protein eL19
9I
(Lj)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
10J
(Lk)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
11K
(Ll)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
12L
(Lm)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
13M
(Ln)
60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
Homo sapiens (human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
14N
(Lo)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
15O
(Lp)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
16P
(Lq)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
17Q
(Lr)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
18R
(Ls)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
19S
(Lt)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
20T
(Lu)
60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
21U
(Lv)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
22V
(Lw)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
23W
(Lx)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
24X
(Ly)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
25Y
(Lz)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
26Z
(Na)
Nascent polypeptide-associated complex subunit alphapolymer23825857.51UniProt (Q13765)
Pfam (PF01849)
Pfam (PF19026)
Homo sapiens (human)NAC-alpha,Alpha-NAC
27AA
(Nb)
Isoform 2 of Transcription factor BTF3polymer16217724.01UniProt (P20290)
Pfam (PF01849)
Homo sapiens (human)Nascent polypeptide-associated complex subunit beta,NAC-beta,RNA polymerase B transcription factor 3
28BA
(Nd)
Ubiquitin-like protein SMT3,N-alpha-acetyltransferase 40polymer36541586.01UniProt (Q12306)
UniProt (Q86UY6)
Pfam (PF00240)
Pfam (PF00583)
Saccharomyces cerevisiae S288CN-acetyltransferase 11,N-alpha-acetyltransferase D,NatD,hNatD,Protein acetyltransferase 1
29CA
(Nm)
Methionine aminopeptidase 1polymer38643274.21UniProt (P53582)
Pfam (PF15801)
Pfam (PF00557)
Homo sapiens (human)MAP 1,MetAP 1,Peptidase M 1
30DA
(S1)
18S rRNApolymer1869603609.21Homo sapiens
31EA
(S2)
mRNApolymer1824588968.11Homo sapiens
32FA
(S3)
tRNApolymer7624452.61Homo sapiens
33GA
(SA)
40S ribosomal protein S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
Homo sapiens (human)Small ribosomal subunit protein eS8
34HA
(SB)
40S ribosomal protein S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (human)Small ribosomal subunit protein uS4
35IA
(SC)
40S ribosomal protein S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
Homo sapiens (human)Small ribosomal subunit protein uS7
36JA
(SD)
40S ribosomal protein S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (human)Small ribosomal subunit protein uS17
37KA
(SE)
40S ribosomal protein S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
Homo sapiens (human)Small ribosomal subunit protein eS10
38LA
(SF)
40S ribosomal protein S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (human)Small ribosomal subunit protein uS15
39MA
(SG)
40S ribosomal protein S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
Homo sapiens (human)Small ribosomal subunit protein uS11
40NA
(SH)
40S ribosomal protein S12polymer13214539.01UniProt (P25398)
Pfam (PF01248)
Homo sapiens (human)Small ribosomal subunit protein eS12
41OA
(Sa)
40S ribosomal protein S15polymer15217760.01UniProt (K7ELC2)
Pfam (PF00203)
Homo sapiens (human)
42PA
(Sb)
40S ribosomal protein S17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
Homo sapiens (human)Small ribosomal subunit protein eS17
43QA
(Sc)
40S ribosomal protein S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
Homo sapiens (human)Small ribosomal subunit protein uS9
44RA
(Sd)
Small ribosomal subunit protein uS13polymer15217654.61UniProt (P62269)
Pfam (PF00416)
Homo sapiens (human)40S ribosomal protein S18,Ke-3,Ke3
45SA
(Se)
Small ribosomal subunit protein eS21polymer849150.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)40S ribosomal protein S21
46TA
(Sf)
40S ribosomal protein S15apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
Homo sapiens (human)Small ribosomal subunit protein uS8
47UA
(Sg)
Small ribosomal subunit protein uS12polymer14315860.71UniProt (P62266)
Pfam (PF00164)
Homo sapiens (human)40S ribosomal protein S23
48VA
(L2)
5S rRNApolymer12138998.11GenBank (23898)Homo sapiens (human)
49WA
(Sh)
Isoform 3 of Small ribosomal subunit protein eS24polymer13115237.11UniProt (P62847)
Pfam (PF01282)
Homo sapiens (human)40S ribosomal protein S24
50XA
(Si)
Small ribosomal subunit protein eS19polymer14516104.61UniProt (P39019)
Pfam (PF01090)
Homo sapiens (human)40S ribosomal protein S19
51YA
(Sj)
40S ribosomal protein S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
Homo sapiens (human)Small ribosomal subunit protein eS26
52ZA
(Sk)
40S ribosomal protein S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
Homo sapiens (human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
53AB
(Sl)
40S ribosomal protein S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
Homo sapiens (human)Small ribosomal subunit protein uS10
54BB
(Sm)
40S ribosomal protein S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
Homo sapiens (human)Small ribosomal subunit protein eS25
55CB
(Sn)
Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinpolymer13314415.71UniProt (P62861)
Pfam (PF00240)
Pfam (PF04758)
Homo sapiens (human)FAU ubiquitin like and ribosomal protein S30 fusion
56DB
(So)
40S ribosomal protein S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
Homo sapiens (human)Small ribosomal subunit protein eS28
57EB
(Sp)
40S ribosomal protein S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
Homo sapiens (human)Small ribosomal subunit protein uS14
58FB
(Sq)
60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
59GB
(Sr)
Ubiquitinpolymer15618004.01UniProt (P62979)
Pfam (PF00240)
Pfam (PF01599)
Homo sapiens (human)
60HB
(Ss)
Receptor of activated protein C kinase 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
61IB
(St)
Small ribosomal subunit protein uS2polymer29532778.81UniProt (P08865)
Pfam (PF16122)
Pfam (PF00318)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,40S ribosomal protein SA,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4
62JB
(Su)
40S ribosomal protein S3apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
Homo sapiens (human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
63KB
(Sv)
40S ribosomal protein S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
64LB
(Sw)
Small ribosomal subunit protein eS4, X isoformpolymer26329654.91UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (human)40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein
65MB
(Sx)
40S ribosomal protein S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (human)Small ribosomal subunit protein uS3
66NB
(Sy)
40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
Homo sapiens (human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
67OB
(Sz)
40S ribosomal protein S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
Homo sapiens (human)Small ribosomal subunit protein eS7
68PB
(L3)
5.8S rRNApolymer15750463.81GenBank (555853)Homo sapiens (human)
69QB
(LA)
Large ribosomal subunit protein eL37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)60S ribosomal protein L37,G1.16
70RB
(LB)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
71SB
(LC)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
72TB
(LD)
Ubiquitin-60S ribosomal protein L40polymer9911470.71Pfam (PF00240)
UniProt (by SIFTS) (P0CG48)
Homo sapiens (human)
73UB
(LE)
60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
74VB
(LF)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
75WB
(LG)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
76XB
(LH)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
77YB
(LI)
Large ribosomal subunit protein uL30polymer24829291.01UniProt (P18124)
Pfam (PF00327)
Pfam (PF08079)
Homo sapiens (human)60S ribosomal protein L7
78ZB
(LJ)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
79AC
(LK)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
80BC
(LM)
60S ribosomal protein L10polymer21424630.11UniProt (P27635)
Pfam (PF00252)
Homo sapiens (human)Laminin receptor homolog,Large ribosomal subunit protein uL16,Protein QM,Ribosomal protein L10,Tumor suppressor QM
81CC
(LN)
Green fluorescent protein,Small ubiquitin-related modifier 1,Green fluorescent protein,Small ubiquitin-related modifier 1,Histone H4,X-box-binding protein 1,X-box-binding protein 1polymer41445314.11UniProt (P42212)
UniProt (P55857)
UniProt (B1AHH2)
Aequorea victoriaOsSUMO1,Ubiquitin-like protein SMT3
82DC
(LO)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
83EC
(LP)
Large ribosomal subunit protein eL13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)60S ribosomal protein L13,Breast basic conserved protein 1
84FC
(LQ)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
85GC
(La)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
86HC
(Lb)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
87IC, KC, LC, NC, OC...
(Lx, Nm, Sj, Sp, Sr...)
ZINC IONnon-polymer65.410Chemie (ZN)
88JC
(Nd)
COENZYME Anon-polymer767.51Chemie (COA)
89MC
(L2)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
Sequence modifications
Na: 1 - 215 (UniProt: Q13765)
PDBExternal DatabaseDetails
Met -22-initiating methionine
Gly -21-expression tag
Ser -20-expression tag
Ser -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
Ser -12-expression tag
Ser -11-expression tag
Gly -10-expression tag
Leu -9-expression tag
Glu -8-expression tag
Val -7-expression tag
Leu -6-expression tag
Phe -5-expression tag
Gln -4-expression tag
Gly -3-expression tag
Pro -2-expression tag
Ser -1-expression tag
Gly 0-expression tag
Nd: -93 - 1 (UniProt: Q12306)
PDBExternal DatabaseDetails
Met -127-initiating methionine
Gly -126-expression tag
Ser -125-expression tag
Ser -124-expression tag
His -123-expression tag
His -122-expression tag
His -121-expression tag
His -120-expression tag
His -119-expression tag
His -118-expression tag
Ser -117-expression tag
Ser -116-expression tag
Gly -115-expression tag
Leu -114-expression tag
Val -113-expression tag
Pro -112-expression tag
Arg -111-expression tag
Gly -110-expression tag
Ser -109-expression tag
His -108-expression tag
Met -107-expression tag
Ala -106-expression tag
Ser -105-expression tag
Met -104-expression tag
Thr -103-expression tag
Gly -102-expression tag
Gly -101-expression tag
Gln -100-expression tag
Gln -99-expression tag
Met -98-expression tag
Gly -97-expression tag
Arg -96-expression tag
Gly -95-expression tag
Ser -94-expression tag
Nd: 2 - 237 (UniProt: Q86UY6)
Nm: 1 - 386 (UniProt: P53582)
PDBExternal DatabaseDetails
Asn 220Asp 220engineered mutation
SG: 1 - 151 (UniProt: P62263)
PDBExternal DatabaseDetails
Ias 138Asp 138conflict
Sd: 2 - 152 (UniProt: P62269)
PDBExternal DatabaseDetails
Ace 2-acetylation
Se: 1 - 83 (UniProt: P63220)
PDBExternal DatabaseDetails
Ace 0-acetylation
St: 2 - 295 (UniProt: P08865)
PDBExternal DatabaseDetails
Ace 2-acetylation
LN: 3 - 231 (UniProt: P42212)
PDBExternal DatabaseDetails
Met -4-initiating methionine
Ala -3-expression tag
Ala -2-expression tag
Ala -1-expression tag
Thr 0-expression tag
Met 1-expression tag
Val 2-expression tag
Leu 65Phe 64conflict
Thr 66Ser 65conflict
Lys 222Leu 221conflict
Gly 232-linker
Ser 233-linker
Gly 234-linker
Ser 235-linker
Gly 236-linker
Ser 237-linker
Gly 238-linker
Ser 239-linker
Gly 240-linker
Ser 241-linker
Gly 242-linker
Ser 243-linker
Gly 244-linker
Ser 245-linker
Gly 246-linker
Ser 247-linker
Gly 248-linker
Ser 249-linker
Gly 250-linker
Ser 251-linker
Gly 252-linker
Ser 253-linker
Ser 254-linker
Ala 255-linker
Ala 256-linker
Gly 257-linker
LN: 258 - 349 (UniProt: P55857)
PDBExternal DatabaseDetails
Lys 312Asn 59conflict
Lys 319Asp 66conflict
Ala 325Gly 72conflict
Arg 327Gln 74conflict
LN: 350 - 385 (PDB: 9SYR)
LN: 386 - 409 (UniProt: B1AHH2)
PDBExternal DatabaseDetails
Cys 403Pro 259conflict
Ala 404Ser 260conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight4573553.3
Non-Polymers*Number of molecules12
Total formula weight1944.8
All*Total formula weight4575498.1
*Water molecules are not included.

248636

PDB entries from 2026-02-04

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