9SYA
Crystal structure of HERV-K envelope glycoprotein surface subunit with cholates and sulfates bound
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Surface protein | polymer | 343 | 39114.6 | 2 | UniProt (P61570) | Homo sapiens (human) | SU |
| 2 | C, H, I (C, H, I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 3 | D (D) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 4 | E, F, G (E, F, G) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 3 | In PDB GlyTouCan (G09724ZC) | |||
| 5 | J, O (A, B) | 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE | non-polymer | 614.9 | 2 | Chemie (CPS) PubChem (457060) PubChem (3659871) PubChem (9895216) PubChem (10371606) PubChem (16396400) PubChem (18397788) PubChem (177530666) PubChem (24883538) PubChem (44120060) PubChem (44450441) PubChem (53229977) PubChem (50987450) PubChem (51028881) PubChem (51028882) PubChem (107670) PubChem (71774074) PubChem (90488808) PubChem (91746229) PubChem (91809267) PubChem (53393728) PubChem (58528211) PubChem (102565428) PubChem (122361936) PubChem (122362044) PubChem (131632459) PubChem (133645855) PubChem (137704711) PubChem (146159681) | |||
| 6 | K (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 7 | L, M, P, Q (A, B) | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
| 8 | N (B) | CHOLIC ACID | non-polymer | 408.6 | 1 | Chemie (CHD) PubChem (303) PubChem (6676) PubChem (122340) PubChem (160636) PubChem (221493) PubChem (376829) PubChem (439520) PubChem (440427) PubChem (637625) PubChem (3246132) PubChem (5283869) PubChem (5283870) PubChem (5283871) PubChem (5283873) PubChem (5283875) PubChem (5283877) PubChem (5283878) PubChem (5302608) PubChem (5315844) PubChem (6708709) PubChem (6850901) PubChem (6850905) PubChem (9802771) PubChem (9846429) PubChem (9866174) PubChem (71172094) PubChem (12080557) PubChem (12303167) PubChem (12303172) PubChem (12303175) PubChem (12303178) PubChem (12303180) PubChem (13020205) PubChem (16401672) PubChem (16758100) PubChem (18528842) PubChem (20638765) PubChem (23636694) PubChem (23640631) PubChem (23876184) PubChem (24836753) PubChem (24883735) PubChem (43835083) PubChem (44135469) PubChem (44629918) PubChem (44657327) PubChem (45114537) PubChem (45382168) PubChem (46397523) PubChem (46783697) PubChem (16401251) PubChem (21139644) PubChem (1762378) PubChem (49791911) PubChem (49796810) PubChem (44339334) PubChem (46780112) PubChem (59130005) PubChem (59381614) PubChem (59903914) PubChem (67122255) PubChem (50989873) PubChem (69904012) PubChem (130213) PubChem (145883) PubChem (70866085) PubChem (71001249) PubChem (239672) PubChem (71314856) PubChem (71752895) PubChem (74765127) PubChem (51432410) PubChem (51546373) PubChem (89830646) PubChem (91128541) PubChem (53298695) PubChem (5283876) PubChem (5283879) PubChem (5283880) PubChem (5283872) PubChem (5283874) PubChem (98044963) PubChem (99565617) PubChem (53393606) PubChem (53477699) PubChem (122645815) PubChem (124161889) PubChem (124318072) PubChem (124488681) PubChem (125037036) PubChem (126577457) PubChem (129274856) PubChem (129274855) PubChem (129359810) PubChem (133135020) PubChem (133126746) PubChem (11350342) PubChem (57937243) PubChem (12303168) PubChem (58133002) PubChem (13020196) PubChem (58582306) PubChem (58984417) PubChem (59032051) PubChem (162771689) PubChem (59316662) PubChem (163059393) PubChem (163059399) PubChem (163059389) PubChem (166858402) PubChem (59877711) PubChem (59963674) PubChem (59997751) PubChem (60076012) PubChem (60098994) PubChem (60114995) PubChem (66678354) PubChem (68097396) PubChem (68131418) PubChem (68318251) PubChem (68338620) PubChem (68372213) PubChem (71260265) PubChem (70649328) PubChem (70824975) PubChem (70930320) PubChem (70930789) PubChem (70960845) PubChem (91810856) PubChem (99564899) PubChem (99565857) PubChem (117684834) PubChem (117767695) PubChem (117944573) PubChem (118241311) PubChem (121232934) PubChem (122537896) PubChem (122537897) PubChem (122644681) PubChem (122644923) PubChem (122646384) PubChem (124328806) PubChem (124364505) PubChem (124425250) PubChem (124488680) PubChem (124511215) PubChem (124518077) PubChem (124518078) PubChem (124518446) PubChem (124761950) PubChem (124841930) PubChem (124896923) PubChem (124896924) PubChem (124896925) PubChem (124896926) PubChem (124904187) PubChem (124904188) PubChem (124906682) PubChem (124906683) PubChem (124914603) PubChem (124914604) PubChem (124914605) PubChem (124914606) PubChem (125027431) PubChem (125037037) PubChem (126422551) PubChem (126422552) PubChem (126577461) PubChem (126672319) PubChem (126969154) PubChem (129106816) PubChem (129460958) PubChem (129600748) PubChem (129628082) PubChem (130220803) PubChem (131700165) PubChem (132441695) PubChem (133548348) PubChem (133612061) PubChem (133655733) PubChem (133687870) PubChem (133688934) PubChem (134462403) PubChem (134555902) PubChem (134866321) PubChem (135373095) PubChem (137474142) PubChem (138107312) PubChem (139248576) PubChem (139291795) PubChem (139372812) PubChem (140618124) PubChem (141854542) PubChem (142134118) PubChem (143658950) PubChem (144316980) PubChem (145264188) PubChem (145714625) PubChem (146030145) PubChem (146665897) PubChem (154033190) PubChem (154036252) PubChem (154747009) PubChem (154825357) PubChem (155275443) PubChem (155605940) PubChem (157048615) PubChem (157269375) PubChem (157351909) PubChem (157383333) PubChem (158041002) PubChem (158420924) PubChem (158675416) PubChem (160081178) PubChem (160743345) PubChem (160917187) PubChem (161973449) PubChem (163059390) PubChem (163059391) PubChem (163059392) PubChem (163059394) PubChem (163059395) PubChem (163059396) PubChem (163059397) PubChem (163059398) PubChem (163059400) PubChem (163452349) PubChem (163452350) PubChem (163452351) PubChem (167344826) PubChem (168841979) PubChem (168841990) PubChem (168845540) PubChem (169410142) PubChem (169436432) PubChem (171721516) PubChem (157060709) | |||
| 9 | R, S (A, B) | water | water | 18.0 | 292 | Chemie (HOH) |
Sequence modifications
A, B: 111 - 430 (UniProt: P61570)
| PDB | External Database | Details |
|---|---|---|
| Ala 96 | - | expression tag |
| Pro 97 | - | expression tag |
| Phe 98 | - | expression tag |
| Asp 99 | - | expression tag |
| Asp 100 | - | expression tag |
| Asp 101 | - | expression tag |
| Asp 102 | - | expression tag |
| Lys 103 | - | expression tag |
| Leu 104 | - | expression tag |
| Glu 105 | - | expression tag |
| Val 106 | - | expression tag |
| Leu 107 | - | expression tag |
| Phe 108 | - | expression tag |
| Gln 109 | - | expression tag |
| Gly 110 | - | expression tag |
| Ala 141 | Cys 141 | conflict |
| Arg 167 | Thr 167 | conflict |
| Thr 185 | Ile 185 | conflict |
| Pro 431 | - | expression tag |
| Gly 432 | - | expression tag |
| His 433 | - | expression tag |
| His 434 | - | expression tag |
| His 435 | - | expression tag |
| His 436 | - | expression tag |
| His 437 | - | expression tag |
| His 438 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 78229.2 | |
| Branched | Number of molecules | 7 |
| Total formula weight | 5078.6 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 2243.8 | |
| All* | Total formula weight | 85551.7 |
