9SY6
Structural characterization of hibernating ribosomes in the Gram-negative pathogen Pseudomonas aeruginosa
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Large ribosomal subunit protein bL33 | polymer | 51 | 6060.1 | 1 | UniProt (A0A140SG33) | Pseudomonas aeruginosa PA14 | |
| 2 | B (1) | Large ribosomal subunit protein bL34 | polymer | 44 | 5226.3 | 1 | UniProt (A0A087L9L7) | Pseudomonas aeruginosa PA14 | |
| 3 | C (2) | Large ribosomal subunit protein bL35 | polymer | 64 | 7388.0 | 1 | UniProt (A0A069QC44) | Pseudomonas aeruginosa PA14 | |
| 4 | D (3) | Large ribosomal subunit protein bL36 | polymer | 38 | 4447.4 | 1 | UniProt (E2RXU2) | Pseudomonas aeruginosa PA14 | |
| 5 | E (4) | Large ribosomal subunit protein bL31 | polymer | 71 | 7934.2 | 1 | UniProt (A0A072ZJG4) | Pseudomonas aeruginosa PA14 | |
| 6 | F (A) | 16S rRNA (1535-MER) | polymer | 1536 | 497972.1 | 1 | GenBank (2971014100) | Pseudomonas aeruginosa PA14 | |
| 7 | G (B) | Small ribosomal subunit protein uS2 | polymer | 246 | 27376.5 | 1 | UniProt (A0A072ZPV8) | Pseudomonas aeruginosa PA14 | |
| 8 | H (C) | Small ribosomal subunit protein uS3 | polymer | 228 | 25887.2 | 1 | UniProt (A0A140S919) | Pseudomonas aeruginosa PA14 | |
| 9 | I (D) | Small ribosomal subunit protein uS4 | polymer | 206 | 23318.7 | 1 | UniProt (A0A072ZDF7) | Pseudomonas aeruginosa PA14 | |
| 10 | J (E) | Small ribosomal subunit protein uS5 | polymer | 166 | 17650.4 | 1 | UniProt (A0A241XG65) | Pseudomonas aeruginosa PA14 | |
| 11 | K (F) | Small ribosomal subunit protein bS6 | polymer | 139 | 16189.7 | 1 | UniProt (A0A069Q263) | Pseudomonas aeruginosa PA14 | |
| 12 | L (G) | Small ribosomal subunit protein uS7 | polymer | 156 | 17541.5 | 1 | UniProt (A0A2V3F2U6) | Pseudomonas aeruginosa PA14 | |
| 13 | M (H) | Small ribosomal subunit protein uS8 | polymer | 130 | 14190.6 | 1 | UniProt (E2RXT9) | Pseudomonas aeruginosa PA14 | |
| 14 | N (I) | Small ribosomal subunit protein uS9 | polymer | 130 | 14643.8 | 1 | UniProt (A0A069PXX1) | Pseudomonas aeruginosa PA14 | |
| 15 | O (J) | Small ribosomal subunit protein uS10 | polymer | 103 | 11786.6 | 1 | UniProt (E2RXT0) | Pseudomonas aeruginosa PA14 | |
| 16 | P (K) | Small ribosomal subunit protein uS11 | polymer | 129 | 13655.7 | 1 | UniProt (E2RXU4) | Pseudomonas aeruginosa PA14 | |
| 17 | Q (L) | Small ribosomal subunit protein uS12 | polymer | 123 | 13876.2 | 1 | UniProt (A0A071L394) | Pseudomonas aeruginosa PA14 | |
| 18 | R (M) | Small ribosomal subunit protein uS13 | polymer | 118 | 13292.5 | 1 | UniProt (E2RXU3) | Pseudomonas aeruginosa PA14 | |
| 19 | S (N) | Small ribosomal subunit protein uS14 | polymer | 101 | 11591.5 | 1 | UniProt (E2RXT8) | Pseudomonas aeruginosa PA14 | |
| 20 | T (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10135.7 | 1 | UniProt (A0A071L3R7) | Pseudomonas aeruginosa PA14 | |
| 21 | U (P) | Small ribosomal subunit protein bS16 | polymer | 83 | 9233.5 | 1 | UniProt (A0A0C6ET39) | Pseudomonas aeruginosa PA14 | |
| 22 | V (Q) | Small ribosomal subunit protein uS17 | polymer | 88 | 10106.8 | 1 | UniProt (E2RXT5) | Pseudomonas aeruginosa PA14 | |
| 23 | W (R) | Small ribosomal subunit protein bS18 | polymer | 76 | 8892.4 | 1 | UniProt (A0A2V3DLV3) | Pseudomonas aeruginosa PA14 | |
| 24 | X (S) | Small ribosomal subunit protein uS19 | polymer | 91 | 10382.3 | 1 | UniProt (E2RXT2) | Pseudomonas aeruginosa PA14 | |
| 25 | Y (T) | Small ribosomal subunit protein bS20 | polymer | 91 | 9942.7 | 1 | UniProt (A0A072ZDZ9) | Pseudomonas aeruginosa PA14 | |
| 26 | Z (W) | non-STOP mRNA | polymer | 15 | 4952.0 | 1 | Escherichia coli | ||
| 27 | AA (X) | Ribosome hibernation promoting factor | polymer | 102 | 11759.5 | 1 | UniProt (A0A071L218) | Pseudomonas aeruginosa PA14 | Hibernation factor HPF |
| 28 | BA (a) | 23S rRNA (2890-MER) | polymer | 2891 | 937150.1 | 1 | Pseudomonas aeruginosa PA14 | ||
| 29 | CA (b) | 5S rRNA (117-MER) | polymer | 120 | 38596.9 | 1 | Pseudomonas aeruginosa PA14 | ||
| 30 | DA (c) | Large ribosomal subunit protein uL2 | polymer | 273 | 29641.3 | 1 | UniProt (A0A241XHA2) | Pseudomonas aeruginosa PA14 | |
| 31 | EA (d) | Large ribosomal subunit protein uL3 | polymer | 211 | 22639.7 | 1 | UniProt (A0A072ZBZ2) | Pseudomonas aeruginosa PA14 | |
| 32 | FA (e) | Large ribosomal subunit protein uL4 | polymer | 200 | 21673.9 | 1 | UniProt (A0A241XH26) | Pseudomonas aeruginosa PA14 | |
| 33 | GA (f) | Large ribosomal subunit protein uL5 | polymer | 179 | 20424.8 | 1 | UniProt (A0A072ZMU2) | Pseudomonas aeruginosa PA14 | |
| 34 | HA (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 19129.1 | 1 | UniProt (A0A2V3F3S9) | Pseudomonas aeruginosa PA14 | |
| 35 | IA (h) | Large ribosomal subunit protein bL9 | polymer | 148 | 15551.7 | 1 | UniProt (A0A072ZKF0) | Pseudomonas aeruginosa PA14 | |
| 36 | JA (i) | Large ribosomal subunit protein uL13 | polymer | 142 | 16058.6 | 1 | UniProt (A0A071L356) | Pseudomonas aeruginosa PA14 | |
| 37 | KA (j) | Large ribosomal subunit protein uL14 | polymer | 122 | 13435.9 | 1 | UniProt (E2RXT6) | Pseudomonas aeruginosa PA14 | |
| 38 | LA (k) | Large ribosomal subunit protein uL15 | polymer | 144 | 15204.5 | 1 | UniProt (A0A2V3D5Z8) | Pseudomonas aeruginosa PA14 | |
| 39 | MA (l) | Large ribosomal subunit protein uL16 | polymer | 137 | 15465.3 | 1 | UniProt (A0A069QEB6) | Pseudomonas aeruginosa PA14 | |
| 40 | NA (m) | Large ribosomal subunit protein bL17 | polymer | 129 | 14533.9 | 1 | UniProt (A0A072ZCA1) | Pseudomonas aeruginosa PA14 | |
| 41 | OA (n) | Large ribosomal subunit protein uL18 | polymer | 116 | 12687.7 | 1 | UniProt (E2RXU0) | Pseudomonas aeruginosa PA14 | |
| 42 | PA (o) | Large ribosomal subunit protein bL19 | polymer | 116 | 13055.2 | 1 | UniProt (A0A263PZC6) | Pseudomonas aeruginosa PA14 | |
| 43 | QA (p) | Large ribosomal subunit protein bL20 | polymer | 118 | 13398.0 | 1 | UniProt (A0A069QEE3) | Pseudomonas aeruginosa PA14 | |
| 44 | RA (q) | Large ribosomal subunit protein bL21 | polymer | 103 | 11678.6 | 1 | UniProt (A0A072ZDZ0) | Pseudomonas aeruginosa PA14 | |
| 45 | SA (r) | Large ribosomal subunit protein uL22 | polymer | 110 | 11936.0 | 1 | UniProt (Q9HWE0) | Pseudomonas aeruginosa PA14 | 50S ribosomal protein L22 |
| 46 | TA (s) | Large ribosomal subunit protein uL23 | polymer | 99 | 10969.7 | 1 | UniProt (E2RXT1) | Pseudomonas aeruginosa PA14 | |
| 47 | UA (t) | Large ribosomal subunit protein uL24 | polymer | 104 | 11494.5 | 1 | UniProt (E2RXT7) | Pseudomonas aeruginosa PA14 | |
| 48 | VA (u) | Large ribosomal subunit protein bL25 | polymer | 204 | 22010.2 | 1 | UniProt (A0A0C6EQQ8) | Pseudomonas aeruginosa PA14 | General stress protein CTC |
| 49 | WA (v) | Large ribosomal subunit protein bL27 | polymer | 85 | 9010.5 | 1 | UniProt (A0A071LFT4) | Pseudomonas aeruginosa PA14 | |
| 50 | XA (w) | Large ribosomal subunit protein bL28 | polymer | 78 | 9087.6 | 1 | UniProt (A0A072ZIQ9) | Pseudomonas aeruginosa PA14 | |
| 51 | YA (x) | Large ribosomal subunit protein uL29 | polymer | 63 | 7213.4 | 1 | UniProt (E2RXT4) | Pseudomonas aeruginosa PA14 | |
| 52 | ZA (y) | Large ribosomal subunit protein uL30 | polymer | 58 | 6489.6 | 1 | UniProt (E2RXU1) | Pseudomonas aeruginosa PA14 | |
| 53 | AB (z) | Large ribosomal subunit protein bL32 | polymer | 60 | 6807.6 | 1 | UniProt (A0A069QB25) | Pseudomonas aeruginosa PA14 | |
| 54 | BB, CB (3, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) | |||
| 55 | AC, AD, AE, AH, AI... (A, a, p, v, z...) | MAGNESIUM ION | non-polymer | 24.3 | 354 | Chemie (MG) PubChem (888) | |||
| 56 | AF, AG, AR, AS, AT... (A, a, e, f, X...) | POTASSIUM ION | non-polymer | 39.1 | 169 | Chemie (K) PubChem (813) |
Sequence modifications
K: 1 - 129 (UniProt: E2RXU4)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asn 119 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 53 |
| Total formula weight | 2150778.2 | |
| Non-Polymers* | Number of molecules | 525 |
| Total formula weight | 15342.3 | |
| All* | Total formula weight | 2166120.6 |
