9SUR

Crystal Structure of the NlpC/P60 Peptidase YkfC from Bacillus subtilis with Covalently Bound Dipeptide

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D (BBB, AAA, CCC, DDD)	Gamma-D-glutamyl-L-lysine dipeptidyl-peptidase	polymer	304	34134.1	4	UniProt (O35010) Pfam (PF23795) Pfam (PF00877)	Bacillus subtilis subsp. subtilis str. 168	Cell wall endopeptidase YkfC
2	E, F, L, M, S... (BBB, AAA, CCC, DDD)	ZINC ION	non-polymer		65.4	8	Chemie (ZN) PubChem (32051)
3	G, N, Z (BBB, AAA, DDD)	TETRAETHYLENE GLYCOL	non-polymer		194.2	3	Chemie (PG4) PubChem (8200)
4	H (BBB)	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	non-polymer		122.1	1	Chemie (TRS) PubChem (3777159)
5	AA, I, O (DDD, BBB, AAA)	DI(HYDROXYETHYL)ETHER	non-polymer		106.1	3	Chemie (PEG) PubChem (8117)
6	BA, J, Q, V (DDD, BBB, AAA, CCC)	ALANINE	non-polymer		89.1	4	Chemie (ALA) PubChem (5950)
7	CA, K, R, W (DDD, BBB, AAA, CCC)	D-GLUTAMIC ACID	non-polymer		147.1	4	Chemie (DGL)
8	P, U (AAA, CCC)	GLYCEROL	non-polymer		92.1	2	Chemie (GOL) PubChem (753)
9	DA, EA, FA, GA (BBB, AAA, CCC, DDD)	water	water		18.0	267	Chemie (HOH)

Sequence modifications

BBB, AAA, CCC, DDD: 1 - 296 (UniProt: O35010)

PDB	External Database	Details
Leu 297	-	expression tag
Glu 298	-	expression tag
His 299	-	expression tag
His 300	-	expression tag
His 301	-	expression tag
His 302	-	expression tag
His 303	-	expression tag
His 304	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	136536.2
Non-Polymers*	Number of molecules	25
	Total formula weight	2675.5
All*	Total formula weight	139211.8

*Water molecules are not included.