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9SSO

Crystal structure of SARS-CoV-2 Mpro in complex with RK-496

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
3C-like proteinase nsp5polymer30633825.52UniProt (P0DTC1)
Pfam (PF05409)
Severe acute respiratory syndrome coronavirus 23CL-PRO,3CLp,Main protease,Mpro,Non-structural protein 5,nsp5,SARS coronavirus main proteinase
2C, D
(A, B)
1-[(3~{S},6~{S},7~{R})-7-oxidanyl-4,8-bis(oxidanylidene)-6-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-5,9-diazabicyclo[14.3.1]icosa-1(19),16(20),17-trien-3-yl]-3-[2,2,2-tris(fluoranyl)ethyl]ureanon-polymer555.62Chemie (A1JQY)
3E, F
(A, B)
waterwater18.0269Chemie (HOH)
Sequence modifications
A, B: 1 - 303 (UniProt: P0DTC1)
PDBExternal DatabaseDetails
Thr 304-expression tag
Phe 305-expression tag
Gln 306-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight67651.1
Non-Polymers*Number of molecules2
Total formula weight1111.2
All*Total formula weight68762.3
*Water molecules are not included.

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PDB entries from 2026-08-26

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