9SRA
Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | rRNA 23S | polymer | 3018 | 984301.8 | 1 | Pyrococcus abyssi GE5 | ||
| 2 | B (2) | rRNA 16S | polymer | 1512 | 492728.8 | 1 | Pyrococcus abyssi GE5 | ||
| 3 | C (3) | rRNA 5S | polymer | 128 | 41443.8 | 1 | Pyrococcus abyssi GE5 | ||
| 4 | D (H) | Dehydrogenase | polymer | 392 | 44583.8 | 1 | UniProt (Q9UYR4) | Pyrococcus abyssi GE5 | |
| 5 | E (AA) | 30S ribosomal protein S3Ae | polymer | 199 | 22888.1 | 1 | UniProt (Q9V2K7) | Pyrococcus abyssi GE5 | Ribosomal protein S1e |
| 6 | F (AB) | 30S ribosomal protein S2 | polymer | 202 | 23026.9 | 1 | UniProt (Q9V191) | Pyrococcus abyssi GE5 | |
| 7 | G (AC) | Zn-ribbon RNA-binding protein involved in translation | polymer | 63 | 7163.4 | 1 | UniProt (G8ZFK7) | Pyrococcus abyssi GE5 | |
| 8 | H (AD) | 30S ribosomal protein S4 | polymer | 180 | 21381.9 | 1 | UniProt (P61992) | Pyrococcus abyssi GE5 | |
| 9 | I (AE) | 30S ribosomal protein S4e | polymer | 243 | 28246.1 | 1 | UniProt (Q9V1U8) | Pyrococcus abyssi GE5 | |
| 10 | J (AF) | 30S ribosomal protein S5 | polymer | 236 | 26523.9 | 1 | UniProt (Q9V1V5) | Pyrococcus abyssi GE5 | |
| 11 | K (AG) | 30S ribosomal protein S6e | polymer | 125 | 14029.5 | 1 | UniProt (Q9UYS3) | Pyrococcus abyssi GE5 | |
| 12 | L (AH) | 30S ribosomal protein S7 | polymer | 215 | 24662.8 | 1 | UniProt (Q9V109) | Pyrococcus abyssi GE5 | |
| 13 | M (AI) | 30S ribosomal protein S8 | polymer | 130 | 14772.2 | 1 | UniProt (Q9V1V0) | Pyrococcus abyssi GE5 | |
| 14 | N (AJ) | 30S ribosomal protein S8e | polymer | 127 | 14293.7 | 1 | UniProt (Q9UZL4) | Pyrococcus abyssi GE5 | |
| 15 | O (AK) | 30S ribosomal protein S9 | polymer | 135 | 15293.9 | 1 | UniProt (Q9V195) | Pyrococcus abyssi GE5 | |
| 16 | P (AL) | 30S ribosomal protein S10 | polymer | 102 | 11795.8 | 1 | UniProt (Q9V0V6) | Pyrococcus abyssi GE5 | |
| 17 | Q (AM) | 30S ribosomal protein S11 | polymer | 137 | 14773.0 | 1 | UniProt (P62010) | Pyrococcus abyssi GE5 | |
| 18 | R (AN) | 30S ribosomal protein S12 | polymer | 147 | 16477.6 | 1 | UniProt (P61994) | Pyrococcus abyssi GE5 | |
| 19 | S (AP) | 30S ribosomal protein S14 type Z | polymer | 56 | 6644.1 | 1 | UniProt (P62012) | Pyrococcus abyssi GE5 | |
| 20 | T (AQ) | 30S ribosomal protein S15 | polymer | 158 | 18697.1 | 1 | UniProt (Q9V2K9) | Pyrococcus abyssi GE5 | |
| 21 | U (AR) | 30S ribosomal protein S17 | polymer | 113 | 13364.6 | 1 | UniProt (Q9V1U5) | Pyrococcus abyssi GE5 | |
| 22 | V (AS) | 30S ribosomal protein S17e | polymer | 67 | 8059.5 | 1 | UniProt (Q9V0G0) | Pyrococcus abyssi GE5 | |
| 23 | W (AU) | 30S ribosomal protein S19e | polymer | 150 | 17422.3 | 1 | UniProt (Q9V0G8) | Pyrococcus abyssi GE5 | |
| 24 | FB, X (AV, B6) | 30S ribosomal protein S24e | polymer | 99 | 11798.6 | 2 | UniProt (Q9UY20) | Pyrococcus abyssi GE5 | |
| 25 | Y (AW) | 30S ribosomal protein S27e | polymer | 65 | 7186.6 | 1 | UniProt (Q9UXZ3) | Pyrococcus abyssi GE5 | |
| 26 | Z (AX) | 30S ribosomal protein S28e | polymer | 71 | 8102.3 | 1 | UniProt (P61029) | Pyrococcus abyssi GE5 | |
| 27 | AA (AY) | 30S ribosomal protein S27ae | polymer | 51 | 5992.2 | 1 | UniProt (P61238) | Pyrococcus abyssi GE5 | |
| 28 | BA (AZ) | 30S ribosomal protein S3 | polymer | 210 | 23472.3 | 1 | UniProt (Q9V1U1) | Pyrococcus abyssi GE5 | |
| 29 | CA (A0) | eS32 | polymer | 37 | 5023.4 | 1 | Pyrococcus abyssi GE5 | ||
| 30 | BB, DA, PB (A3, BG, B4) | 50S ribosomal protein L7Ae | polymer | 123 | 13442.7 | 3 | UniProt (P62008) | Pyrococcus abyssi GE5 | Ribosomal protein L8e |
| 31 | EA (AT) | 30S ribosomal protein S19 | polymer | 132 | 15307.3 | 1 | UniProt (Q9V1T9) | Pyrococcus abyssi GE5 | |
| 32 | FA (AO) | 30S ribosomal protein S13 | polymer | 148 | 16992.9 | 1 | UniProt (Q9V1A0) | Pyrococcus abyssi GE5 | |
| 33 | GA (BB) | Large ribosomal subunit protein uL2 | polymer | 239 | 26202.4 | 1 | UniProt (Q9V1T8) | Pyrococcus abyssi GE5 | 50S ribosomal protein L2 |
| 34 | HA (BY) | Large ribosomal subunit protein uL30 | polymer | 155 | 17745.0 | 1 | UniProt (Q9V1V6) | Pyrococcus abyssi GE5 | 50S ribosomal protein L30 |
| 35 | IA (BO) | Large ribosomal subunit protein uL18 | polymer | 203 | 23308.9 | 1 | UniProt (Q9V1V4) | Pyrococcus abyssi GE5 | 50S ribosomal protein L18 |
| 36 | JA (BC) | Large ribosomal subunit protein uL3 | polymer | 361 | 40928.2 | 1 | UniProt (Q9V1T5) | Pyrococcus abyssi GE5 | 50S ribosomal protein L3 |
| 37 | KA, XA (B5, BK) | Large ribosomal subunit protein eL14 | polymer | 82 | 8913.6 | 2 | UniProt (Q9UZJ5) | Pyrococcus abyssi GE5 | 50S ribosomal protein L14e |
| 38 | LA (BL) | Large ribosomal subunit protein uL15 | polymer | 147 | 16360.1 | 1 | UniProt (Q9V1V7) | Pyrococcus abyssi GE5 | 50S ribosomal protein L15 |
| 39 | MA (Bf) | Large ribosomal subunit protein eL39 | polymer | 51 | 6316.8 | 1 | UniProt (Q9UYI8) | Pyrococcus abyssi GE5 | 50S ribosomal protein L39e |
| 40 | NA (BU) | Large ribosomal subunit protein uL24 | polymer | 121 | 14420.1 | 1 | UniProt (Q9V1U7) | Pyrococcus abyssi GE5 | 50S ribosomal protein L24 |
| 41 | OA (Bb) | Large ribosomal subunit protein eL32 | polymer | 130 | 15660.8 | 1 | UniProt (Q9V1V2) | Pyrococcus abyssi GE5 | 50S ribosomal protein L32e |
| 42 | PA (Be) | Large ribosomal subunit protein eL37 | polymer | 62 | 7321.8 | 1 | UniProt (P62004) | Pyrococcus abyssi GE5 | 50S ribosomal protein L37e |
| 43 | QA (BE) | Large ribosomal subunit protein uL5 | polymer | 188 | 21549.2 | 1 | UniProt (Q9V1U9) | Pyrococcus abyssi GE5 | 50S ribosomal protein L5 |
| 44 | RA (Ba) | Large ribosomal subunit protein eL31 | polymer | 94 | 11052.2 | 1 | UniProt (Q9UYI7) | Pyrococcus abyssi GE5 | 50S ribosomal protein L31e |
| 45 | SA (BT) | Large ribosomal subunit protein uL23 | polymer | 86 | 9893.7 | 1 | UniProt (Q9V1T7) | Pyrococcus abyssi GE5 | 50S ribosomal protein L23 |
| 46 | TA (BW) | Large ribosomal subunit protein uL29 | polymer | 68 | 8182.9 | 1 | UniProt (Q9V1U2) | Pyrococcus abyssi GE5 | 50S ribosomal protein L29 |
| 47 | UA (Bi) | Large ribosomal subunit protein eL43 | polymer | 83 | 9005.9 | 1 | UniProt (Q9V202) | Pyrococcus abyssi GE5 | 50S ribosomal protein L37Ae,Ribosomal protein L43e |
| 48 | VA (BI) | Large ribosomal subunit protein uL13 | polymer | 142 | 16317.3 | 1 | UniProt (Q9V196) | Pyrococcus abyssi GE5 | 50S ribosomal protein L13 |
| 49 | WA (BR) | Large ribosomal subunit protein eL21 | polymer | 97 | 11408.5 | 1 | UniProt (Q9UZP1) | Pyrococcus abyssi GE5 | 50S ribosomal protein L21e |
| 50 | YA (BQ) | Large ribosomal subunit protein eL19 | polymer | 151 | 18240.9 | 1 | UniProt (Q9V1V3) | Pyrococcus abyssi GE5 | 50S ribosomal protein L19e |
| 51 | ZA (BV) | Large ribosomal subunit protein eL24 | polymer | 67 | 8135.6 | 1 | UniProt (Q9V0W3) | Pyrococcus abyssi GE5 | 50S ribosomal protein L24e |
| 52 | AB (Bj) | Large ribosomal subunit protein eL42 | polymer | 94 | 11274.6 | 1 | UniProt (Q9UXZ2) | Pyrococcus abyssi GE5 | 50S ribosomal protein L44e |
| 53 | CB (BD) | Large ribosomal subunit protein uL4 | polymer | 255 | 28758.7 | 1 | UniProt (Q9V1T6) | Pyrococcus abyssi GE5 | 50S ribosomal protein L4 |
| 54 | DB (BF) | Large ribosomal subunit protein uL6 | polymer | 184 | 20736.1 | 1 | UniProt (Q9V1V1) | Pyrococcus abyssi GE5 | 50S ribosomal protein L6 |
| 55 | EB (BZ) | Large ribosomal subunit protein eL30 | polymer | 99 | 10751.6 | 1 | UniProt (Q9V112) | Pyrococcus abyssi GE5 | 50S ribosomal protein L30e |
| 56 | GB (BP) | Large ribosomal subunit protein eL18 | polymer | 120 | 13839.3 | 1 | UniProt (Q9V197) | Pyrococcus abyssi GE5 | 50S ribosomal protein L18e |
| 57 | HB (BM) | Large ribosomal subunit protein eL15 | polymer | 194 | 22657.9 | 1 | UniProt (Q9V0D2) | Pyrococcus abyssi GE5 | 50S ribosomal protein L15e |
| 58 | IB (BS) | Large ribosomal subunit protein uL22 | polymer | 155 | 17834.7 | 1 | UniProt (Q9V1U0) | Pyrococcus abyssi GE5 | 50S ribosomal protein L22 |
| 59 | JB (Bd) | Large ribosomal subunit protein eL34 | polymer | 91 | 10935.4 | 1 | UniProt (Q9UZJ7) | Pyrococcus abyssi GE5 | 50S ribosomal protein L34e |
| 60 | KB (BN) | Large ribosomal subunit protein uL16 | polymer | 181 | 20923.3 | 1 | UniProt (Q9UYU9) | Pyrococcus abyssi GE5 | 50S ribosomal protein L10e |
| 61 | LB (Bg) | Large ribosomal subunit protein eL40 | polymer | 51 | 5900.0 | 1 | UniProt (P62006) | Pyrococcus abyssi GE5 | 50S ribosomal protein L40e |
| 62 | MB (Bc) | Large ribosomal subunit protein eL33 | polymer | 87 | 9755.6 | 1 | UniProt (Q9V1P2) | Pyrococcus abyssi GE5 | 50S ribosomal protein L35Ae |
| 63 | NB (BJ) | Large ribosomal subunit protein uL14 | polymer | 141 | 15319.0 | 1 | UniProt (Q9V1U6) | Pyrococcus abyssi GE5 | 50S ribosomal protein L14 |
| 64 | OB (Bl) | Large ribosomal subunit protein eL20 | polymer | 77 | 9364.0 | 1 | UniProt (Q9UYI5) | Pyrococcus abyssi GE5 | 50S ribosomal protein L18Ae,50S ribosomal protein L20e,50S ribosomal protein LX,LXA |
| 65 | QB (Bk) | C2H2-type domain-containing protein | polymer | 65 | 7795.5 | 1 | UniProt (G8ZKB7) | Pyrococcus abyssi GE5 | |
| 66 | RB (sd) | antiSD-RNA | polymer | 9 | 2951.8 | 1 | Pyrococcus abyssi GE5 | ||
| 67 | AC, AD, AE, AF, AG... (1, 2, BB, Bb, BD...) | MAGNESIUM ION | non-polymer | 24.3 | 244 | Chemie (MG) PubChem (888) | |||
| 68 | AL, BL, FL, GL, HL... (AR, AW, Be, Bi, BV...) | ZINC ION | non-polymer | 65.4 | 13 | Chemie (ZN) PubChem (32051) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 70 |
| Total formula weight | 2537251.9 | |
| Non-Polymers* | Number of molecules | 257 |
| Total formula weight | 6780.7 | |
| All* | Total formula weight | 2544032.6 |
