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9SR5

Crystal Structure of the NlpC/P60 Peptidase YkfC from Bacillus subtilis

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Gamma-D-glutamyl-L-lysine dipeptidyl-peptidasepolymer31135034.01UniProt (O35010)
Pfam (PF23795)
Pfam (PF00877)
Bacillus subtilis subsp. subtilis str. 168Cell wall endopeptidase YkfC
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
PubChem (32051)
3C, D
(A)
2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACIDnon-polymer207.32Chemie (NHE)
PubChem (66898)
4E, F, G, H
(A)
SULFATE IONnon-polymer96.14Chemie (SO4)
5I, J, K, L, M
(A)
GLYCEROLnon-polymer92.15Chemie (GOL)
PubChem (753)
6N
(A)
waterwater18.024Chemie (HOH)
Sequence modifications
A: 1 - 296 (UniProt: O35010)
PDBExternal DatabaseDetails
Glu 297-expression tag
Asn 298-expression tag
Leu 299-expression tag
Tyr 300-expression tag
Phe 301-expression tag
Gln 302-expression tag
Gly 303-expression tag
Leu 304-expression tag
Glu 305-expression tag
His 306-expression tag
His 307-expression tag
His 308-expression tag
His 309-expression tag
His 310-expression tag
His 311-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight35034.0
Non-Polymers*Number of molecules12
Total formula weight1324.7
All*Total formula weight36358.7
*Water molecules are not included.

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PDB entries from 2026-11-04

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