9SK8
Model of M. pneumoniae 30S IF1/2/3 tRNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 16S ribosomal RNA | polymer | 1492 | 482405.6 | 1 | GenBank (26117688) | Mycoplasmoides pneumoniae M129 | |
| 2 | B (6) | Initiator fMet-tRNAfMet | polymer | 70 | 22591.4 | 1 | GenBank (3042778399) | Mycoplasmoides pneumoniae M129 | |
| 3 | C (A) | Small ribosomal subunit protein uS2 | polymer | 249 | 28427.9 | 1 | UniProt (P75560) Pfam (PF00318) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S2 |
| 4 | D (B) | Small ribosomal subunit protein uS3 | polymer | 215 | 24163.0 | 1 | UniProt (P41205) Pfam (PF07650) Pfam (PF00189) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S3 |
| 5 | E (C) | Small ribosomal subunit protein uS4 | polymer | 203 | 23589.3 | 1 | UniProt (P46775) Pfam (PF00163) Pfam (PF01479) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S4 |
| 6 | F (D) | Small ribosomal subunit protein uS5 | polymer | 153 | 16715.7 | 1 | UniProt (Q50301) Pfam (PF00333) Pfam (PF03719) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S5 |
| 7 | G (E) | Small ribosomal subunit protein bS6 | polymer | 167 | 19352.9 | 1 | UniProt (P75543) Pfam (PF01250) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S6 |
| 8 | H (F) | Small ribosomal subunit protein uS7 | polymer | 154 | 17765.8 | 1 | UniProt (P75545) Pfam (PF00177) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S7 |
| 9 | I (G) | Small ribosomal subunit protein uS8 | polymer | 141 | 15771.9 | 1 | UniProt (Q50304) Pfam (PF00410) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S8 |
| 10 | J (H) | Small ribosomal subunit protein uS9 | polymer | 128 | 14603.0 | 1 | UniProt (P75179) Pfam (PF00380) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S9 |
| 11 | K (I) | Small ribosomal subunit protein uS10 | polymer | 101 | 11524.8 | 1 | UniProt (P75581) Pfam (PF00338) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S10 |
| 12 | L (J) | Small ribosomal subunit protein uS11 | polymer | 114 | 11877.7 | 1 | UniProt (Q50296) Pfam (PF00411) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S11 |
| 13 | M (K) | Small ribosomal subunit protein uS12 | polymer | 136 | 15319.1 | 1 | UniProt (P75546) Pfam (PF00164) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S12 |
| 14 | N (L) | Small ribosomal subunit protein uS13 | polymer | 118 | 13520.7 | 1 | UniProt (Q50297) Pfam (PF00416) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S13 |
| 15 | O (M) | Small ribosomal subunit protein uS14 | polymer | 60 | 6770.2 | 1 | UniProt (Q50305) Pfam (PF00253) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S14 type Z |
| 16 | P (N) | Small ribosomal subunit protein uS15 | polymer | 83 | 9576.2 | 1 | UniProt (P75173) Pfam (PF00312) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S15 |
| 17 | Q (O) | Small ribosomal subunit protein bS16 | polymer | 87 | 10065.0 | 1 | UniProt (A0A0H3DLS7) | Mycoplasmoides pneumoniae M129 | |
| 18 | R (P) | Small ribosomal subunit protein uS17 | polymer | 83 | 9599.3 | 1 | UniProt (Q50309) Pfam (PF00366) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S17 |
| 19 | S (Q) | Small ribosomal subunit protein bS18 | polymer | 65 | 7631.1 | 1 | UniProt (P75541) Pfam (PF01084) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S18 |
| 20 | T (R) | Small ribosomal subunit protein uS19 | polymer | 84 | 9682.2 | 1 | UniProt (P75576) Pfam (PF00203) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S19 |
| 21 | U (S) | Small ribosomal subunit protein bS20 | polymer | 77 | 8977.4 | 1 | UniProt (P75237) Pfam (PF01649) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S20 |
| 22 | V (T) | Small ribosomal subunit protein bS21 | polymer | 53 | 6724.1 | 1 | UniProt (P57079) | Mycoplasmoides pneumoniae M129 | 30S ribosomal protein S21 |
| 23 | W (U) | Translation initiation factor IF-3 | polymer | 163 | 18684.8 | 1 | UniProt (P78024) Pfam (PF05198) Pfam (PF00707) | Mycoplasmoides pneumoniae M129 | |
| 24 | X (V) | Translation initiation factor IF-1 | polymer | 65 | 7479.9 | 1 | UniProt (Q50298) Pfam (PF01176) | Mycoplasmoides pneumoniae M129 | |
| 25 | Y (W) | Translation initiation factor IF-2 | polymer | 584 | 63990.4 | 1 | UniProt (P75590) Pfam (PF00009) Pfam (PF22042) Pfam (PF11987) Pfam (PF03144) | Mycoplasmoides pneumoniae M129 | |
| 26 | AA, Z (Q, M) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) PubChem (32051) |
Sequence modifications
5: 5 - 1509 (GenBank: 26117688)
| PDB | External Database | Details |
|---|---|---|
| - | G 118493 | deletion |
| - | C 118494 | deletion |
| - | A 118495 | deletion |
| - | U 118496 | deletion |
| - | G 119332 | deletion |
| - | A 119333 | deletion |
| - | G 119334 | deletion |
| - | G 119335 | deletion |
| - | U 119336 | deletion |
| - | U 119337 | deletion |
| - | A 119338 | deletion |
| - | A 119339 | deletion |
| - | U 119388 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 25 |
| Total formula weight | 876809.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 130.8 | |
| All* | Total formula weight | 876940.2 |
