9SCU
Cryo-EM structure of the Arabidopsis thaliana 60S ribosomal subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 25S RNA | polymer | 3381 | 1094756.3 | 1 | Arabidopsis thaliana | ||
| 2 | B (Ck) | Large ribosomal subunit protein eL38z/eL38y | polymer | 69 | 8139.7 | 1 | UniProt (O22860) Pfam (PF01781) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L38 |
| 3 | C (CA) | Large ribosomal subunit protein uL2x | polymer | 258 | 28008.5 | 1 | UniProt (Q42064) Pfam (PF00181) Pfam (PF03947) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L8-3 |
| 4 | D (CK) | Large ribosomal subunit protein eL42z/eL42y | polymer | 105 | 12160.4 | 1 | UniProt (O23290) Pfam (PF00935) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L36a |
| 5 | E (Cp) | (thale cress) hypothetical protein | polymer | 92 | 10356.2 | 1 | UniProt (A0A7G2EP20) | Arabidopsis thaliana (thale cress) | |
| 6 | F (Cl) | Large ribosomal subunit protein eL39z/eL39x | polymer | 51 | 6435.8 | 1 | UniProt (P51424) Pfam (PF00832) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L39-1 |
| 7 | G (CY) | Large ribosomal subunit protein uL24z | polymer | 146 | 16983.7 | 1 | UniProt (P51414) Pfam (PF16906) Pfam (PF00467) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L26-1 |
| 8 | H (CL) | Large ribosomal subunit protein eL13z | polymer | 206 | 23824.0 | 1 | UniProt (P41127) Pfam (PF01294) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L13-1,Protein BBC1 homolog |
| 9 | I (6) | RNA (119-MER) | polymer | 121 | 38917.1 | 1 | GenBank (2442578393) | Arabidopsis thaliana (thale cress) | |
| 10 | J (Cm) | Ubiquitin-ribosomal protein eL40z fusion protein | polymer | 128 | 14763.5 | 1 | UniProt (B9DHA6) Pfam (PF00240) Pfam (PF01020) | Arabidopsis thaliana (thale cress) | |
| 11 | K (CZ) | Large ribosomal subunit protein eL27x | polymer | 135 | 15644.7 | 1 | UniProt (P51419) Pfam (PF01777) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L27-3 |
| 12 | L (CM) | Large ribosomal subunit protein eL14z | polymer | 134 | 15536.5 | 1 | UniProt (Q9SIM4) Pfam (PF01929) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L14-1 |
| 13 | M (7) | RNA (151-MER) | polymer | 164 | 52785.3 | 1 | GenBank (3019173171) | Arabidopsis thaliana (thale cress) | |
| 14 | N (CN) | Large ribosomal subunit protein eL15y | polymer | 204 | 24297.2 | 1 | UniProt (Q8VYF1) Pfam (PF00827) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L15-2 |
| 15 | O (Ca) | Large ribosomal subunit protein uL15x | polymer | 146 | 16498.5 | 1 | UniProt (P49637) Pfam (PF00828) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L27a-3 |
| 16 | P (w) | Large ribosomal subunit protein eL22z | polymer | 124 | 14045.2 | 1 | UniProt (Q9M9W1) Pfam (PF01776) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L22-2 |
| 17 | Q (Cb) | 60S ribosomal protein L29 | polymer | 83 | 9410.9 | 1 | UniProt (F4JC32) Pfam (PF01779) | Arabidopsis thaliana (thale cress) | |
| 18 | R (CO) | Large ribosomal subunit protein uL13w | polymer | 206 | 23643.3 | 1 | UniProt (Q9FKC0) Pfam (PF00572) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L13a-4 |
| 19 | S (CB) | Large ribosomal subunit protein uL3z | polymer | 389 | 44653.3 | 1 | UniProt (P17094) Pfam (PF00297) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L3-1,Protein EMBRYO DEFECTIVE 2207 |
| 20 | T (CP) | Large ribosomal subunit protein uL22z | polymer | 176 | 19937.9 | 1 | UniProt (Q93VI3) Pfam (PF00237) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L17-1 |
| 21 | U (Cc) | Large ribosomal subunit protein eL30x | polymer | 112 | 12300.4 | 1 | UniProt (Q9LSA3) Pfam (PF01248) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L30-3 |
| 22 | V (CQ) | Large ribosomal subunit protein eL18y | polymer | 187 | 20972.9 | 1 | UniProt (P42791) Pfam (PF17135) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L18-2 |
| 23 | W (CC) | Large ribosomal subunit protein uL4z | polymer | 406 | 44783.3 | 1 | UniProt (Q9SF40) Pfam (PF00573) Pfam (PF14374) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L4-1,L1 |
| 24 | X (CR) | Large ribosomal subunit protein eL19z | polymer | 209 | 24396.0 | 1 | UniProt (Q9LUQ6) Pfam (PF01280) Pfam (PF25476) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L19-2 |
| 25 | Y (Cd) | Large ribosomal subunit protein eL31x | polymer | 119 | 13836.2 | 1 | UniProt (P51420) Pfam (PF01198) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L31-3 |
| 26 | Z (CS) | Ribosomal protein L18ae/LX family protein | polymer | 217 | 25781.6 | 1 | UniProt (A0A1P8AY36) Pfam (PF01775) | Arabidopsis thaliana (thale cress) | |
| 27 | AA (CD) | Large ribosomal subunit protein uL18z | polymer | 301 | 34420.1 | 1 | UniProt (Q8LBI1) Pfam (PF17144) Pfam (PF14204) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L5-1,Ribosomal protein L5 A,Protein ASYMMETRIC LEAVES1/2 ENHANCER 6,Protein OLIGOCELLULA 5,Protein PIGGYBACK 3 |
| 28 | BA (CT) | Large ribosomal subunit protein eL21x/eL21w | polymer | 164 | 18749.9 | 1 | UniProt (Q9FDZ9) Pfam (PF01157) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L21-2 |
| 29 | CA (Ce) | Large ribosomal subunit protein eL32z | polymer | 133 | 15539.3 | 1 | UniProt (P49211) Pfam (PF01655) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L32-1 |
| 30 | DA (CV) | Large ribosomal subunit protein uL14x/uL14z/uL14y | polymer | 140 | 15052.8 | 1 | UniProt (P49690) Pfam (PF00238) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L23,Protein EMBRYO DEFECTIVE 2171 |
| 31 | EA (CE) | Large ribosomal subunit protein eL6x | polymer | 233 | 26160.8 | 1 | UniProt (Q9C9C5) Pfam (PF03868) Pfam (PF01159) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L6-3 |
| 32 | FA (CW) | Large ribosomal subunit protein eL24z | polymer | 164 | 18900.4 | 1 | UniProt (Q42347) Pfam (PF01246) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L24-1 |
| 33 | GA (Cf) | Large ribosomal subunit protein eL33z | polymer | 111 | 12823.9 | 1 | UniProt (Q9FZH0) Pfam (PF01247) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L35a-2 |
| 34 | HA (CX) | Large ribosomal subunit protein uL23y | polymer | 154 | 17436.9 | 1 | UniProt (Q9M3C3) Pfam (PF03939) Pfam (PF00276) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L23a-2 |
| 35 | IA (CF) | Large ribosomal subunit protein uL30y | polymer | 242 | 28226.2 | 1 | UniProt (P60040) Pfam (PF08079) Pfam (PF00327) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L7-2 |
| 36 | JA (Cg) | Large ribosomal subunit protein eL34z | polymer | 120 | 13740.3 | 1 | UniProt (Q42351) Pfam (PF01199) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L34-1 |
| 37 | KA (CG) | Large ribosomal subunit protein eL8z | polymer | 257 | 29191.8 | 1 | UniProt (P49692) Pfam (PF01248) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L7a-1 |
| 38 | LA (Ch) | Large ribosomal subunit protein uL29x | polymer | 123 | 14215.1 | 1 | UniProt (Q9M3D2) Pfam (PF00831) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L35-3 |
| 39 | MA (CH) | Large ribosomal subunit protein uL6z/uL6y | polymer | 194 | 22059.7 | 1 | UniProt (P49209) Pfam (PF00347) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L9-1 |
| 40 | NA (Ci) | Large ribosomal subunit protein eL36y | polymer | 112 | 12713.3 | 1 | UniProt (Q9M352) Pfam (PF01158) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L36-2 |
| 41 | OA (CI) | Large ribosomal subunit protein uL16y | polymer | 221 | 24962.3 | 1 | UniProt (Q08770) Pfam (PF00252) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L10-2,Wilms tumor suppressor protein homolog |
| 42 | PA (Cj) | Large ribosomal subunit protein eL37z | polymer | 95 | 10844.7 | 1 | UniProt (Q8LFH7) Pfam (PF01907) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L37-1 |
| 43 | QA (CJ) | Large ribosomal subunit protein uL5z | polymer | 182 | 20867.2 | 1 | UniProt (P42795) Pfam (PF00281) Pfam (PF00673) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L11-1,L16A |
| 44 | AB, BB, CB, DB, EB... (5) | POTASSIUM ION | non-polymer | 39.1 | 18 | Chemie (K) PubChem (813) | |||
| 45 | AC, BC, CC, DC, EC... (5) | MAGNESIUM ION | non-polymer | 24.3 | 32 | Chemie (MG) PubChem (888) | |||
| 46 | PC (Cp) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 43 |
| Total formula weight | 1968773.0 | |
| Non-Polymers* | Number of molecules | 51 |
| Total formula weight | 1546.9 | |
| All* | Total formula weight | 1970319.9 |
