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9RPV

Structure of the ZAK-bound human disome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A4)
mRNA of the collided 80Spolymer144325.51Homo sapiens
2B
(A5)
mRNA of the stalled 80Spolymer82550.61Homo sapiens
3C
(B4)
P/E tRNA on the collided 80Spolymer15048508.01Homo sapiens
4D
(B5)
P-site tRNA of the stalled 80Spolymer7724846.91Homo sapiens
5E
(D4)
A/P tRNA on the collided 80Spolymer15249016.01Homo sapiens
6F
(E4)
Endothelial differentiation-related factor 1polymer14816401.71UniProt (O60869)
Pfam (PF08523)
Pfam (PF01381)
Homo sapiens (human)EDF-1,Multiprotein-bridging factor 1,MBF1
7G
(E5)
E-site tRNA of the stalled 80Spolymer7524004.31Homo sapiens (human)
8H
(L5)
28S rRNA of the collided 80Spolymer50701640196.01Homo sapiens (human)
9BB, I
(L7, M7)
5S rRNApolymer12038691.92GenBank (23898)Homo sapiens (human)
10J
(L8)
5.8S rRNA of the collided 80Spolymer15650143.61GenBank (555853)Homo sapiens (human)
11K
(LA)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
12L
(LB)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
13FB, M
(LC, MC)
60S ribosomal protein L4polymer42747804.62UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
14GB, N
(LD, MD)
60S ribosomal protein L5polymer29734426.82UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)Large ribosomal subunit protein uL18
15HB, O
(LE, ME)
Large ribosomal subunit protein eL6polymer28832810.22UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)60S ribosomal protein L6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
16IB, P
(LF, MF)
Large ribosomal subunit protein uL30polymer24829291.02UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)60S ribosomal protein L7
17JB, Q
(LG, MG)
60S ribosomal protein L7apolymer26630061.82UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
18KB, R
(LH, MH)
60S ribosomal protein L9polymer19221899.52UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
19S
(LI)
Ribosomal protein uL16-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (human)60S ribosomal protein L10-like,Large ribosomal subunit protein uL16-like
20MB, T
(LJ, MJ)
60S ribosomal protein L11polymer17820288.52UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
21NB, U
(LL, ML)
Large ribosomal subunit protein eL13polymer21124321.72UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)60S ribosomal protein L13,Breast basic conserved protein 1
22OB, V
(LM, MM)
60S ribosomal protein L14polymer21523485.02UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
23PB, W
(LN, MN)
60S ribosomal protein L15polymer20424207.32UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
24QB, X
(LO, MO)
60S ribosomal protein L13apolymer20323633.42UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
25RB, Y
(LP, MP)
60S ribosomal protein L17polymer18421443.22UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
26SB, Z
(LQ, MQ)
60S ribosomal protein L18polymer18821687.72UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
27AA, TB
(LR, MR)
60S ribosomal protein L19polymer19623535.32UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
28BA, UB
(LS, MS)
60S ribosomal protein L18apolymer17620808.52UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
29CA, VB
(LT, MT)
60S ribosomal protein L21polymer16018610.02UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
30DA, WB
(LU, MU)
60S ribosomal protein L22polymer12814813.02UniProt (P35268)
Pfam (PF01776)
Homo sapiens (human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
31EA, XB
(LV, MV)
60S ribosomal protein L23polymer14014892.52UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
32FA, YB
(LW, MW)
60S ribosomal protein L24polymer15717825.12UniProt (P83731)
Pfam (PF01246)
Homo sapiens (human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
33GA, ZB
(LX, MX)
60S ribosomal protein L23apolymer15617740.22UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
34AC, HA
(LY, MY)
60S ribosomal protein L26polymer14517303.42UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
35BC, IA
(LZ, MZ)
60S ribosomal protein L27polymer13615835.82UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
36JA
(La)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
37KA
(Lb)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
38EC, LA
(Lc, Mc)
60S ribosomal protein L30polymer11512805.12UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
39FC, MA
(Ld, Md)
60S ribosomal protein L31polymer12514494.92UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
40GC, NA
(Le, Me)
60S ribosomal protein L32polymer13515898.92UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
41HC, OA
(Lf, Mf)
60S ribosomal protein L35apolymer11012564.72UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
42IC, PA
(Lg, Mg)
60S ribosomal protein L34polymer11713326.12UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
43JC, QA
(Lh, Mh)
60S ribosomal protein L35polymer12314593.62UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
44KC, RA
(Li, Mi)
60S ribosomal protein L36polymer10512290.92UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
45LC, SA
(Lj, Mj)
Large ribosomal subunit protein eL37polymer9711111.02UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)60S ribosomal protein L37,G1.16
46MC, TA
(Lk, Mk)
60S ribosomal protein L38polymer708238.92UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
47NC, UA
(Ll, Ml)
60S ribosomal protein L39polymer516426.82UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
48VA
(Lm)
Ubiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
49PC, WA
(Ln, Mn)
60S ribosomal protein L41polymer253473.52UniProt (P62945)
Pfam (PF05162)
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
50XA
(Lo)
60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
51RC, YA
(Lp, Mp)
60S ribosomal protein L37apolymer9210299.42UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
52ZA
(Lr)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
53AB
(M5)
28S rRNA of the stalled 80Spolymer50691640884.51Homo sapiens
54CB
(M8)
5.8S rRNA of the stalled 80Spolymer15650171.71Homo sapiens
55DB
(MA)
Large ribosomal subunit protein uL2polymer25728103.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)60S ribosomal protein L8
56EB
(MB)
Large ribosomal subunit protein uL3polymer40346224.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)60S ribosomal protein L3,HIV-1 TAR RNA-binding protein B,TARBP-B
57LB
(MI)
60S ribosomal protein L10polymer21424630.11UniProt (P27635)
Pfam (PF00252)
Homo sapiens (human)Laminin receptor homolog,Large ribosomal subunit protein uL16,Protein QM,Ribosomal protein L10,Tumor suppressor QM
58CC
(Ma)
Large ribosomal subunit protein uL15polymer14816619.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)
59DC
(Mb)
Large ribosomal subunit protein eL29polymer15917817.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)60S ribosomal protein L29,Cell surface heparin-binding protein HIP
60OC
(Mm)
Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814800.51UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
61QC
(Mo)
Large ribosomal subunit protein eL42polymer10612490.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L36a,60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein
62SC
(Mr)
Large ribosomal subunit protein eL28polymer13715679.51UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)60S ribosomal protein L28
63TC
(Ms)
60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
64UC, VC
(N1, N2)
Mitogen-activated protein kinase kinase kinase 20polymer80091284.12UniProt (Q9NYL2)
Pfam (PF07714)
Pfam (PF00536)
Homo sapiens (human)Human cervical cancer suppressor gene 4 protein,HCCS-4,Leucine zipper- and sterile alpha motif-containing kinase,MLK-like mitogen-activated protein triple kinase,Mitogen-activated protein kinase kinase kinase MLT,Mixed lineage kinase 7,Mixed lineage kinase-related kinase,MLK-related kinase,MRK,Sterile alpha motif- and leucine zipper-containing kinase AZK
65WC
(RA)
Small ribosomal subunit protein uS2polymer29532778.81UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,40S ribosomal protein SA,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4
66GE, XC
(RB, SB)
40S ribosomal protein S3apolymer26430002.12UniProt (P61247)
Pfam (PF01015)
Homo sapiens (human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
67HE, YC
(RC, SC)
40S ribosomal protein S2polymer29331376.52UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
68IE, ZC
(RD, SD)
40S ribosomal protein S3polymer24326729.42UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (human)Small ribosomal subunit protein uS3
69AD, JE
(RE, SE)
Small ribosomal subunit protein eS4, X isoformpolymer26329654.92UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (human)40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein
70BD, KE
(RF, SF)
40S ribosomal protein S5polymer20422913.52UniProt (P46782)
Pfam (PF00177)
Homo sapiens (human)Small ribosomal subunit protein uS7
71CD, LE
(RG, SG)
40S ribosomal protein S6polymer24928751.92UniProt (P62753)
Pfam (PF01092)
Homo sapiens (human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
72DD, ME
(RH, SH)
40S ribosomal protein S7polymer19422168.92UniProt (P62081)
Pfam (PF01251)
Homo sapiens (human)Small ribosomal subunit protein eS7
73ED, NE
(RI, SI)
40S ribosomal protein S8polymer20824263.42UniProt (P62241)
Pfam (PF01201)
Homo sapiens (human)Small ribosomal subunit protein eS8
74FD, OE
(RJ, SJ)
40S ribosomal protein S9polymer19422641.62UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (human)Small ribosomal subunit protein uS4
75GD, PE
(RK, SK)
40S ribosomal protein S10polymer16518933.82UniProt (P46783)
Pfam (PF03501)
Homo sapiens (human)Small ribosomal subunit protein eS10
76HD, QE
(RL, SL)
40S ribosomal protein S11polymer15818468.82UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (human)Small ribosomal subunit protein uS17
77ID, JF
(RM, Sf)
40S ribosomal protein S12polymer13214539.02UniProt (P25398)
Pfam (PF01248)
Homo sapiens (human)Small ribosomal subunit protein eS12
78JD, RE
(RN, SN)
40S ribosomal protein S13polymer15117259.42UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (human)Small ribosomal subunit protein uS15
79KD, SE
(RO, SO)
40S ribosomal protein S14polymer15116302.82UniProt (P62263)
Pfam (PF00411)
Homo sapiens (human)Small ribosomal subunit protein uS11
80LD, TE
(RP, SP)
40S ribosomal protein S15polymer14517076.22UniProt (P62841)
Pfam (PF00203)
Homo sapiens (human)RIG protein,Small ribosomal subunit protein uS19
81MD, UE
(RQ, SQ)
40S ribosomal protein S16polymer14616477.42UniProt (P62249)
Pfam (PF00380)
Homo sapiens (human)Small ribosomal subunit protein uS9
82ND, VE
(RR, SR)
40S ribosomal protein S17polymer13515578.22UniProt (P08708)
Pfam (PF00833)
Homo sapiens (human)Small ribosomal subunit protein eS17
83OD, WE
(RS, SS)
40S ribosomal protein S18polymer15217759.82UniProt (P62269)
Pfam (PF00416)
Homo sapiens (human)Ke-3,Ke3,Small ribosomal subunit protein uS13
84PD, XE
(RT, ST)
40S ribosomal protein S19polymer14516091.62UniProt (P39019)
Pfam (PF01090)
Homo sapiens (human)Small ribosomal subunit protein eS19
85QD, YE
(RU, SU)
40S ribosomal protein S20polymer11913398.82UniProt (P60866)
Pfam (PF00338)
Homo sapiens (human)Small ribosomal subunit protein uS10
86RD
(RV)
Small ribosomal subunit protein eS21polymer849150.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)40S ribosomal protein S21
87AF, SD
(RW, SW)
40S ribosomal protein S15apolymer13014865.62UniProt (P62244)
Pfam (PF00410)
Homo sapiens (human)Small ribosomal subunit protein uS8
88BF, TD
(RX, SX)
40S ribosomal protein S23polymer14315844.72UniProt (P62266)
Pfam (PF00164)
Homo sapiens (human)Small ribosomal subunit protein uS12
89CF, UD
(RY, SY)
40S ribosomal protein S24polymer13315463.32UniProt (P62847)
Pfam (PF01282)
Homo sapiens (human)Small ribosomal subunit protein eS24
90DF, VD
(RZ, SZ)
40S ribosomal protein S25polymer12513776.22UniProt (P62851)
Pfam (PF03297)
Homo sapiens (human)Small ribosomal subunit protein eS25
91EF, WD
(Ra, Sa)
40S ribosomal protein S26polymer11513047.52UniProt (P62854)
Pfam (PF01283)
Homo sapiens (human)Small ribosomal subunit protein eS26
92FF, XD
(Rb, Sb)
40S ribosomal protein S27polymer849480.22UniProt (P42677)
Pfam (PF01667)
Homo sapiens (human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
93GF, YD
(Rc, Sc)
40S ribosomal protein S28polymer697855.12UniProt (P62857)
Pfam (PF01200)
Homo sapiens (human)Small ribosomal subunit protein eS28
94HF, ZD
(Rd, Sd)
40S ribosomal protein S29polymer566690.82UniProt (P62273)
Pfam (PF00253)
Homo sapiens (human)Small ribosomal subunit protein uS14
95AE, IF
(Re, Se)
Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinpolymer13314415.72UniProt (P62861)
Pfam (PF00240)
Pfam (PF04758)
Homo sapiens (human)FAU ubiquitin like and ribosomal protein S30 fusion
96BE, LF
(Rf, sh)
Ubiquitinpolymer15618004.02UniProt (P62979)
Pfam (PF00240)
Pfam (PF01599)
Homo sapiens (human)
97CE, KF
(Rg, Sg)
Receptor of activated protein C kinase 1polymer31735115.72UniProt (P63244)
Pfam (PF00400)
Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
98DE
(S2)
18S rRNA of the collided 80Spolymer1869602777.91GenBank (151415227)Homo sapiens (human)
99EE
(S3)
18S rRNA of the stalled 80Spolymer1869603580.11Homo sapiens
100FE
(SA)
40S ribosomal protein SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
101ZE
(SV)
40S ribosomal protein S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)Small ribosomal subunit protein eS21
102AAA, ABA, ACA, ADA, AEA...
(M5, M8, MP, RN, S2...)
MAGNESIUM IONnon-polymer24.3830Chemie (MG)
103NJ, OJ, QJ, QLA, RJ...
(Lg, Lj, Lm, Sa, Lo...)
ZINC IONnon-polymer65.47Chemie (ZN)
104JY
(M5)
ANISOMYCINnon-polymer265.31Chemie (ANM)
Sequence modifications
Mr: 2 - 137 (UniProt: P46779)
PDBExternal DatabaseDetails
Ace 1-acetylation
RA: 2 - 295 (UniProt: P08865)
PDBExternal DatabaseDetails
Ace 1-acetylation
RV: 1 - 83 (UniProt: P63220)
PDBExternal DatabaseDetails
Ace 0-acetylation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains168
Total formula weight7953229.6
Non-Polymers*Number of molecules838
Total formula weight20896.3
All*Total formula weight7974125.9
*Water molecules are not included.

247536

PDB entries from 2026-01-14

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