9RBQ
Semliki Forest virus trimer 1 in complex with ApoER2 LA5
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | LDL receptor related protein 8,Ig gamma-2A chain C region, A allele | polymer | 301 | 33306.7 | 1 | UniProt (E9PKG2) UniProt (P01863) | Homo sapiens (human) | Immunoglobulin heavy chain gamma polypeptide |
| 2 | B, C, D (D, E, F) | Protein E3 | polymer | 66 | 7384.5 | 3 | UniProt (P0DJZ6) | Semliki Forest virus | Spike glycoprotein E3 |
| 3 | E, F, G (G, H, I) | Structural polyprotein | polymer | 438 | 47489.8 | 3 | UniProt (A0A0F6PP03) | Semliki Forest virus | p130 |
| 4 | H, I, J (J, K, L) | Envelope glycoprotein E2 | polymer | 422 | 46870.3 | 3 | UniProt (P0DJZ6) | Semliki Forest virus | Spike glycoprotein E2 |
| 5 | K, L, M (M, N, O) | Capsid protein | polymer | 267 | 29920.7 | 3 | UniProt (P0DJZ6) | Semliki Forest virus | Coat protein,C |
| 6 | N, O, P (B, R, V) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB | |||
| 7 | Q, S, U (Z, g, n) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 3 | In PDB GlyTouCan (G47362BJ) | |||
| 8 | R, T, V (c, j, q) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 830.8 | 3 | In PDB GlyTouCan (G44511CS) | |||
| 9 | W (A) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) |
Sequence modifications
A: 202 - 254 (UniProt: E9PKG2)
A: 269 - 500 (UniProt: P01863)
J, K, L: 1 - 422 (UniProt: P0DJZ6)
| PDB | External Database | Details |
|---|---|---|
| Gly 200 | - | expression tag |
| Ser 201 | - | expression tag |
| Ala 255 | - | linker |
| Pro 256 | - | linker |
| Ala 257 | - | linker |
| Ala 258 | - | linker |
| Gly 259 | - | linker |
| Ser 260 | - | linker |
| Leu 261 | - | linker |
| Glu 262 | - | linker |
| Val 263 | - | linker |
| Leu 264 | - | linker |
| Phe 265 | - | linker |
| Gln 266 | - | linker |
| Gly 267 | - | linker |
| Pro 268 | - | linker |
J, K, L: 1 - 422 (UniProt: P0DJZ6)
| PDB | External Database | Details |
|---|---|---|
| Lys 162 | Glu 495 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 13 |
| Total formula weight | 428302.4 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 6621.2 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 40.1 | |
| All* | Total formula weight | 434963.7 |
