9R8U
Flag-tag LASV spike acidified to pH 5.0 and re-equilibrated to pH 8.0
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, F (A, B, C) | Pre-glycoprotein polyprotein GP complex | polymer | 259 | 29064.4 | 3 | UniProt (P08669) Pfam (PF00798) | Lassa virus Josiah | Pre-GP-C |
| 2 | B, C, D (a, b, c) | Glycoprotein G2 | polymer | 244 | 28083.3 | 3 | UniProt (P08669) Pfam (PF00798) | Lassa virus Josiah | GP2 |
| 3 | G, I, N, P, R... (D, F, K, M, O...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 4 | H, O, S (E, L, P) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 3 | In PDB GlyTouCan (G00395TQ) | |||
| 5 | J, Q, U (G, N, R) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
| 6 | K, L, M (H, I, J) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 7 | CA, DA, EA, FA, GA... (b, c, B, C, A...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) | |||
| 8 | AA, BA (a) | UNKNOWN LIGAND | non-polymer | 54.9 | 2 | Chemie (UNX) |
Sequence modifications
a, b, c: 260 - 491 (UniProt: P08669)
| PDB | External Database | Details |
|---|---|---|
| Gly 492 | - | expression tag |
| Gly 493 | - | expression tag |
| Gly 494 | - | expression tag |
| Ser 495 | - | expression tag |
| Asp 496 | - | expression tag |
| Tyr 497 | - | expression tag |
| Lys 498 | - | expression tag |
| Asp 499 | - | expression tag |
| Asp 500 | - | expression tag |
| Asp 501 | - | expression tag |
| Asp 502 | - | expression tag |
| Lys 503 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 171443.0 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 10161.4 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 3428.0 | |
| All* | Total formula weight | 185032.4 |
