9R6Q
Local refinement of the N-terminal domain (NTD) and receptor binding domain (RBD) from the Porcine hemagglutinating encephalomyelitis virus (PHEV) Spike in the closed conformation bound to 9-O-Ac-Sia
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Spike glycoprotein | polymer | 1333 | 147884.8 | 2 | UniProt (Q2QKN3) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Porcine hemagglutinating encephalomyelitis virus | S glycoprotein,E2,Peplomer protein |
| 2 | C (D) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | D, F (A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 4 | E (A) | 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid | non-polymer | 351.3 | 1 | Chemie (5N6) |
Sequence modifications
A, B: 15 - 1274 (UniProt: Q2QKN3)
| PDB | External Database | Details |
|---|---|---|
| Gly 1275 | - | expression tag |
| Ser 1276 | - | expression tag |
| Gly 1277 | - | expression tag |
| Tyr 1278 | - | expression tag |
| Ile 1279 | - | expression tag |
| Pro 1280 | - | expression tag |
| Glu 1281 | - | expression tag |
| Ala 1282 | - | expression tag |
| Pro 1283 | - | expression tag |
| Arg 1284 | - | expression tag |
| Asp 1285 | - | expression tag |
| Gly 1286 | - | expression tag |
| Gln 1287 | - | expression tag |
| Ala 1288 | - | expression tag |
| Tyr 1289 | - | expression tag |
| Val 1290 | - | expression tag |
| Arg 1291 | - | expression tag |
| Lys 1292 | - | expression tag |
| Asp 1293 | - | expression tag |
| Gly 1294 | - | expression tag |
| Glu 1295 | - | expression tag |
| Trp 1296 | - | expression tag |
| Val 1297 | - | expression tag |
| Leu 1298 | - | expression tag |
| Leu 1299 | - | expression tag |
| Ser 1300 | - | expression tag |
| Thr 1301 | - | expression tag |
| Phe 1302 | - | expression tag |
| Leu 1303 | - | expression tag |
| Gly 1304 | - | expression tag |
| Ser 1305 | - | expression tag |
| Leu 1306 | - | expression tag |
| Val 1307 | - | expression tag |
| Pro 1308 | - | expression tag |
| Arg 1309 | - | expression tag |
| Gly 1310 | - | expression tag |
| Ser 1311 | - | expression tag |
| His 1312 | - | expression tag |
| His 1313 | - | expression tag |
| His 1314 | - | expression tag |
| His 1315 | - | expression tag |
| His 1316 | - | expression tag |
| His 1317 | - | expression tag |
| His 1318 | - | expression tag |
| His 1319 | - | expression tag |
| Ser 1320 | - | expression tag |
| Ala 1321 | - | expression tag |
| Trp 1322 | - | expression tag |
| Ser 1323 | - | expression tag |
| His 1324 | - | expression tag |
| Pro 1325 | - | expression tag |
| Gln 1326 | - | expression tag |
| Phe 1327 | - | expression tag |
| Glu 1328 | - | expression tag |
| Lys 1329 | - | expression tag |
| Gly 1330 | - | expression tag |
| Thr 1331 | - | expression tag |
| Gly 1332 | - | expression tag |
| Gly 1333 | - | expression tag |
| Leu 1334 | - | expression tag |
| Asn 1335 | - | expression tag |
| Asp 1336 | - | expression tag |
| Ile 1337 | - | expression tag |
| Phe 1338 | - | expression tag |
| Glu 1339 | - | expression tag |
| Ala 1340 | - | expression tag |
| Gln 1341 | - | expression tag |
| Lys 1342 | - | expression tag |
| Ile 1343 | - | expression tag |
| Glu 1344 | - | expression tag |
| Trp 1345 | - | expression tag |
| His 1346 | - | expression tag |
| Glu 1347 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 295769.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 793.7 | |
| All* | Total formula weight | 297149.8 |
