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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9QQB

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B5)		28S rRNApolymer48081557519.51GenBank (GBCN01009604.1)Oryctolagus cuniculus (rabbit)
2B
(B7)		5S rRNApolymer12038691.91GenBank (4CXE_4)Oryctolagus cuniculus (rabbit)
3C
(B8)		5.8S rRNApolymer15850809.01GenBank (GBCN01009604.1)Oryctolagus cuniculus (rabbit)
4D
(BA)		Large ribosomal subunit protein uL2polymer25728103.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L8
5E
(BB)		Ribosomal protein L3polymer40346121.01UniProt (G1TL06)
Pfam (PF00297)		Oryctolagus cuniculus (rabbit)
6F
(BC)		Large ribosomal subunit protein uL4polymer41346283.71UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L4
7G
(BD)		Large ribosomal subunit protein uL18polymer29734481.81UniProt (P19949)
Pfam (PF17144)
Pfam (PF14204)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L5
8H
(BE)		60S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)		Oryctolagus cuniculus (rabbit)
9I
(BF)		Ribosomal Protein uL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF08079)
Pfam (PF00327)		Oryctolagus cuniculus (rabbit)
10J
(BG)		60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)		Oryctolagus cuniculus (rabbit)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
11K
(BH)		60S ribosomal protein L9polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)		Oryctolagus cuniculus (rabbit)
12L
(BI)		60S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)		Oryctolagus cuniculus (rabbit)Ribosomal protein L10
13M
(BJ)		60S ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)		Oryctolagus cuniculus (rabbit)
14N
(BK)		Nascent chainpolymer121039.31Oryctolagus cuniculus
15O
(BL)		Large ribosomal subunit protein eL13polymer21124331.71UniProt (G1TKB3)
Pfam (PF01294)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L13
16P
(BM)		60S ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)		Oryctolagus cuniculus (rabbit)
17Q
(BN)		Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)		Oryctolagus cuniculus (rabbit)
18R
(BO)		Large ribosomal subunit protein uL13polymer20323533.31UniProt (G1TVS8)
Pfam (PF00572)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L13a
19S
(BP)		Large ribosomal subunit protein uL22polymer18421444.21UniProt (G1SCJ6)
Pfam (PF00237)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L17
20T
(BQ)		eL18polymer18821699.71UniProt (F6QKI9)
Pfam (PF17135)		Oryctolagus cuniculus (rabbit)
21U
(BR)		Ribosomal protein L19polymer19623535.31UniProt (G1TJR3)
Pfam (PF01280)
Pfam (PF25476)		Oryctolagus cuniculus (rabbit)
22V
(BS)		Large ribosomal subunit protein eL20polymer17620749.41UniProt (G1TTY7)
Pfam (PF01775)		Oryctolagus cuniculus (rabbit)60S ribosomal protein L18a
23W
(BT)		60S ribosomal protein L21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)		Oryctolagus cuniculus (rabbit)eL21
24X
(BU)		60S ribosomal protein L22polymer12814756.91UniProt (G1TSG1)
Pfam (PF01776)		Oryctolagus cuniculus (rabbit)
25Y
(BV)		Ribosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)		Oryctolagus cuniculus (rabbit)
26Z
(BW)		Ribosomal protein L24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)		Oryctolagus cuniculus (rabbit)eL24
27AA
(BX)		Large ribosomal subunit protein uL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)		Oryctolagus cuniculus (rabbit)uL23
28BA
(BY)		Ribosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)		Oryctolagus cuniculus (rabbit)
29CA
(BZ)		60S ribosomal protein L27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)		Oryctolagus cuniculus (rabbit)
30DA
(Ba)		60S ribosomal protein L27apolymer14816635.61UniProt (G1SNY0)
Pfam (PF00828)		Oryctolagus cuniculus (rabbit)
31EA
(Bb)		60S ribosomal protein L29polymer24526721.71UniProt (G1SGR6)
Pfam (PF01779)		Oryctolagus cuniculus (rabbit)
32FA
(Bc)		60S ribosomal protein L30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)		Oryctolagus cuniculus (rabbit)eL30
33GA
(Bd)		60S ribosomal protein L31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)		Oryctolagus cuniculus (rabbit)eL31
34HA
(Be)		Ribosomal protein L32polymer13515898.91UniProt (A0AAA9WVN6)
Pfam (PF01655)		Oryctolagus cuniculus (rabbit)
35IA
(Bf)		60S ribosomal protein L35apolymer11012580.81UniProt (G1SF08)
Pfam (PF01247)		Oryctolagus cuniculus (rabbit)eL33
36JA
(Bg)		60S ribosomal protein L34polymer11713326.11UniProt (G1TXG5)
Pfam (PF01199)		Oryctolagus cuniculus (rabbit)
37KA
(Bh)		60S ribosomal protein L35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)		Oryctolagus cuniculus (rabbit)uL29
38LA
(Bi)		60S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)		Oryctolagus cuniculus (rabbit)
39MA
(Bj)		Ribosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)		Oryctolagus cuniculus (rabbit)
40NA
(Bk)		60S ribosomal protein L38polymer708238.91UniProt (G1U001)
Pfam (PF01781)		Oryctolagus cuniculus (rabbit)eL38
41OA
(Bl)		60S ribosomal protein L39-likepolymer516455.81UniProt (G1TTN1)
Pfam (PF00832)		Oryctolagus cuniculus (rabbit)eL39
42PA
(Bm)		Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814800.51UniProt (P0DXC2)
Pfam (PF00240)
Pfam (PF01020)		Oryctolagus cuniculus (rabbit)Ubiquitin A-52 residue ribosomal protein fusion product 1
43QA
(Bo)		Large ribosomal subunit protein eL42polymer10612490.01UniProt (A0AAA9WX15)
Pfam (PF00935)		Oryctolagus cuniculus (rabbit)
44RA
(Bp)		60S ribosomal protein L37apolymer9210299.41UniProt (G1SY53)
Pfam (PF01780)		Oryctolagus cuniculus (rabbit)eL43
45SA
(Br)		[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5Bpolymer13715697.51UniProt (A0A8C0DF35)Oryctolagus cuniculus (rabbit)[histone H4]-lysine20 N-methyltransferase KMT5B
46TA
(Bs)		Large ribosomal subunit protein uL10polymer31834380.51UniProt (G1SPK4)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)		Oryctolagus cuniculus (rabbit)uL10
47UA
(Bt)		60S ribosomal protein L12polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)		Oryctolagus cuniculus (rabbit)
48VA
(Bv)		Ribosomal protein uL1polymer21724875.41UniProt (G1SKZ8)
Pfam (PF00687)		Oryctolagus cuniculus (rabbit)
49WA
(Nt)		Nascent polypeptide-associated complex subunit alphapolymer21523406.81UniProt (Q13765)
Pfam (PF01849)
Pfam (PF19026)		Homo sapiens (human)NAC-alpha,Alpha-NAC
50XA
(Nu)		Isoform 2 of Transcription factor BTF3polymer16217724.01UniProt (P20290)
Pfam (PF01849)		Homo sapiens (human)Nascent polypeptide-associated complex subunit beta,NAC-beta,RNA polymerase B transcription factor 3
51YA
(XA)		N-alpha-acetyltransferase 15, NatA auxiliary subunitpolymer866101427.61UniProt (Q9BXJ9)
Pfam (PF13181)
Pfam (PF12569)		Homo sapiens (human)Gastric cancer antigen Ga19,N-terminal acetyltransferase,NMDA receptor-regulated protein 1,Protein tubedown-1,Tbdn100
52ZA
(XB)		N-alpha-acetyltransferase 10polymer23526496.61UniProt (P41227)
Pfam (PF00583)		Homo sapiens (human)N-terminal acetyltransferase complex ARD1 subunit homolog A,hARD1,NatA catalytic subunit Naa10
53AB
(MA)		Glycylpeptide N-tetradecanoyltransferase 1polymer49656884.01UniProt (P30419)
Pfam (PF01233)
Pfam (PF02799)		Homo sapiens (human)Myristoyl-CoA:protein N-myristoyltransferase 1,HsNMT1,NMT 1,Type I N-myristoyltransferase,Peptide N-myristoyltransferase 1,Protein-lysine myristoyltransferase NMT1
54BB
(A2)		18S rRNApolymer1870603928.31GenBank (GBCT01000564.1)Oryctolagus cuniculus (rabbit)
55CB
(AA)		Small ribosomal subunit protein eS27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)		Oryctolagus cuniculus (rabbit)
56DB
(AB)		Small ribosomal subunit protein eS28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)		Oryctolagus cuniculus (rabbit)
57EB
(AC)		Ubiquitin-ribosomal protein eS31 fusion proteinpolymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)		Oryctolagus cuniculus (rabbit)
58FB
(AD)		Ubiquitin-like FUBI-ribosomal protein eS30 fusion proteinpolymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)		Oryctolagus cuniculus (rabbit)
59GB
(AE)		eS26polymer11513047.51UniProt (A0A2K5LQY6)
Pfam (PF01283)
UniProt (by SIFTS) (A0A1S3ADI9)		Oryctolagus cuniculus (rabbit)
60HB
(AF)		Small ribosomal subunit protein RACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)		Oryctolagus cuniculus (rabbit)RACK1
61IB
(AG)		Small ribosomal subunit protein uS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)		Oryctolagus cuniculus (rabbit)uS14
62JB
(AT)		P site Phe tRNApolymer7624451.61GenBank (2082008580)Oryctolagus cuniculus (rabbit)
63KB
(AZ)		Small ribosomal subunit protein uS2polymer29532822.81UniProt (G1TLT8)
Pfam (PF00318)
Pfam (PF16122)		Oryctolagus cuniculus (rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
64LB
(Aa)		40S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)		Oryctolagus cuniculus (rabbit)RPS3A
65MB
(Ab)		40S ribosomal protein S2polymer29331285.41UniProt (O18789)
Pfam (PF00333)
Pfam (PF03719)		Oryctolagus cuniculus (rabbit)
66NB
(Ac)		40S ribosomal protein S3polymer28131146.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)		Oryctolagus cuniculus (rabbit)uS3
67OB
(Ad)		40S ribosomal protein S4polymer26329654.91UniProt (G1TK17)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)		Oryctolagus cuniculus (rabbit)
68PB
(Ae)		Small ribosomal subunit protein uS7polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)		Oryctolagus cuniculus (rabbit)
69QB
(Af)		40S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)		Oryctolagus cuniculus (rabbit)
70RB
(Ag)		40S ribosomal protein S7polymer43247356.21UniProt (G1SVB0)
Pfam (PF01251)		Oryctolagus cuniculus (rabbit)
71SB
(Ah)		40S ribosomal protein S8polymer20824263.41UniProt (G1TJW1)
Pfam (PF01201)		Oryctolagus cuniculus (rabbit)
72TB
(Ai)		Small ribosomal subunit protein uS4polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)		Oryctolagus cuniculus (rabbit)
73UB
(Aj)		S10_plectin domain-containing proteinpolymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)		Oryctolagus cuniculus (rabbit)eS10
74VB
(Ak)		Small ribosomal subunit protein uS17polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)		Oryctolagus cuniculus (rabbit)
75WB
(Al)		Small ribosomal subunit protein eS12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)		Oryctolagus cuniculus (rabbit)
76XB
(Am)		Small ribosomal subunit protein uS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)		Oryctolagus cuniculus (rabbit)uS15
77YB
(An)		Small ribosomal subunit protein uS11polymer15116302.81UniProt (G1T1F0)
Pfam (PF00411)		Oryctolagus cuniculus (rabbit)
78ZB
(Ao)		Small ribosomal subunit protein uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)		Oryctolagus cuniculus (rabbit)
79AC
(Ap)		Small ribosomal subunit protein uS9polymer17219213.51UniProt (G1SGX4)
Pfam (PF00380)		Oryctolagus cuniculus (rabbit)uS9
80BC
(Aq)		Small ribosomal subunit protein eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)		Oryctolagus cuniculus (rabbit)
81CC
(Ar)		Small ribosomal subunit protein uS13polymer15217654.61UniProt (G1TPG3)
Pfam (PF00416)		Oryctolagus cuniculus (rabbit)40S ribosomal protein S18
82DC
(As)		40S ribosomal protein S19polymer14516104.61UniProt (G1TN62)
Pfam (PF01090)		Oryctolagus cuniculus (rabbit)
83EC
(At)		Small ribosomal subunit protein uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)		Oryctolagus cuniculus (rabbit)
84FC
(Au)		Small ribosomal subunit protein eS21polymer849165.41UniProt (G1TM82)
Pfam (PF01249)		Oryctolagus cuniculus (rabbit)40S ribosomal protein S21
85GC
(Av)		Small ribosomal subunit protein uS8polymer13014865.61UniProt (G1TG89)
Pfam (PF00410)		Oryctolagus cuniculus (rabbit)
86HC
(Aw)		40S ribosomal protein S23polymer14315860.71UniProt (G1SZ47)
Pfam (PF00164)		Oryctolagus cuniculus (rabbit)
87IC
(Ax)		40S ribosomal protein S24polymer13015107.91UniProt (G1T3D8)
Pfam (PF01282)		Oryctolagus cuniculus (rabbit)
88JC
(Ay)		Small ribosomal subunit protein eS25polymer12413645.01UniProt (G1TDB3)
Pfam (PF03297)		Oryctolagus cuniculus (rabbit)
89KC
(Az)		Small ribosomal subunit protein eS32polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)		Oryctolagus cuniculus (rabbit)
90AD, BD, CD, DD, ED...
(B5, A2, BS)		SPERMIDINEnon-polymer145.230Chemie (SPD)
91VC, VU, YC
(B5, A2)		SPERMINEnon-polymer202.33Chemie (SPM)
92AE, AF, AG, AH, AI...
(B5, B8, Ba, A2, Bj...)		MAGNESIUM IONnon-polymer24.3412Chemie (MG)
93AAA, AO, AP, AQ, AR...
(A2, B5, Bb, Be, Bj...)		UNKNOWN ATOM OR IONnon-polymer168Chemie (UNX)
94DAA, EAA, EU, FAA, GU...
(AC, AE, Bg, AG, Bj...)		ZINC IONnon-polymer65.48Chemie (ZN)
95MU
(XA)		INOSITOL HEXAKISPHOSPHATEnon-polymer660.01Chemie (IHP)
96ABA, BBA, CBA, DBA, EBA...
(Bd, Be, Bg, Bj, Bl...)		waterwater18.02074Chemie (HOH)
Sequence modifications
B5: 1 - 4808 (GenBank: GBCN01009604.1)
PDBExternal DatabaseDetails
Uy1 3550U 5943conflict
BC: 2 - 413 (UniProt: G1SVW5)
PDBExternal DatabaseDetails
Ace 2-acetylation
BF: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61variant
Arg 93Gly 93variant
Met 131Val 131variant
Ile 153Val 153variant
BG: 1 - 266 (UniProt: P62424)
PDBExternal DatabaseDetails
Leu 184Ile 184conflict
BL: 1 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74variant
Arg 190His 190variant
BQ: 1 - 188 (UniProt: F6QKI9)
PDBExternal DatabaseDetails
Arg 134Cys 134conflict
BR: 1 - 196 (UniProt: G1TJR3)
PDBExternal DatabaseDetails
Arg 38Cys 38variant
Arg 64Gln 64variant
Thr 94Lys 94variant
BU: 1 - 128 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Gly 32Arg 32variant
Ala 36Glu 36variant
Phe 39Ser 39variant
Gly 54Arg 54variant
Arg 97His 97variant
Bk: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24variant
Br: 2 - 137 (UniProt: A0A8C0DF35)
PDBExternal DatabaseDetails
Ace 2-acetylation
A2: 1 - 1870 (GenBank: GBCT01000564.1)
PDBExternal DatabaseDetails
B8n 1249C 3623conflict
4ac 1338C 3712conflict
4ac 1843C 4217conflict
AZ: 2 - 295 (UniProt: G1TLT8)
PDBExternal DatabaseDetails
Ace 2-acetylation
Ab: 1 - 293 (UniProt: O18789)
PDBExternal DatabaseDetails
Ile 33Val 33conflict
Ala 101Ser 101conflict
Ad: 1 - 263 (UniProt: G1TK17)
PDBExternal DatabaseDetails
Gly 25Ser 25variant
Arg 51Lys 51variant
Thr 78Ala 78variant
Val 156Met 156variant
Ah: 1 - 208 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47variant
Ar: 2 - 152 (UniProt: G1TPG3)
PDBExternal DatabaseDetails
Ace 2-acetylation
As: 1 - 145 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119variant
Asn 142Lys 142variant
Au: 1 - 83 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Ace 0-acetylation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains89
Total formula weight4074444.3
Non-Polymers*Number of molecules622
Total formula weight16161.4
All*Total formula weight4090605.7
*Water molecules are not included.

247947

PDB entries from 2026-01-21

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