9QGL
Cryo-EM structure of the PlPVC1 baseplate, 6-fold symmetrized (C6), in extended state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (1A, 1B, 1C, 1D, 1E...) | Phage tail protein | polymer | 149 | 16574.6 | 6 | UniProt (A0A6L9JSR5) | Photorhabdus luminescens | |
| 2 | G, H, I, J, K... (2A, 2B, 2C, 2D, 2E...) | Phage tail sheath family protein | polymer | 354 | 39009.8 | 6 | UniProt (A0A6L9JN00) | Photorhabdus luminescens | |
| 3 | M, N, O, P, Q... (5A, 5B, 5C, 5D, 5E...) | Phage tail protein | polymer | 152 | 17178.6 | 6 | UniProt (A0A2S8PZE9) | Photorhabdus luminescens | |
| 4 | S, T, U, V, W... (7A, 7B, 7C, 7D, 7E...) | Contractile injection system tube protein N-terminal domain-containing protein | polymer | 227 | 24840.1 | 6 | UniProt (A0A2S8PZG1) | Photorhabdus luminescens | |
| 5 | AA, BA, CA, DA, Y... (9A, 9B, 9C, 9D, 9E...) | Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17 | polymer | 239 | 27145.6 | 6 | UniProt (Q7MB49) | Photorhabdus luminescens | |
| 6 | EA, FA, GA, HA, IA... (A, B, C, D, E...) | Photorhabdus luminescens subsp. laumondii TTO1 complete genome segment 6/17 | polymer | 905 | 101454.6 | 6 | UniProt (Q7N649) | Photorhabdus luminescens | |
| 7 | KA, LA, MA, NA, OA... (a, b, c, d, e...) | Baseplate protein J-like domain-containing protein | polymer | 966 | 110905.6 | 6 | UniProt (A0A6L9JN06) | Photorhabdus luminescens | |
| 8 | QA, RA, SA, TA, UA... (3A, 3B, 3C, 3D, 3E...) | Phage tail sheath family protein | polymer | 466 | 51330.9 | 6 | UniProt (A0A6L9JMV2) | Photorhabdus luminescens | |
| 9 | AB, BB, WA, XA, YA... (4A, 4B, 4C, 4D, 4E...) | Phage tail sheath family protein | polymer | 392 | 44076.1 | 6 | UniProt (A0A6L9JN29) | Photorhabdus luminescens |
Sequence modifications
5A, 5B, 5C, 5D, 5E, 5F: 1 - 152 (UniProt: A0A2S8PZE9)
7A, 7B, 7C, 7D, 7E, 7F: 1 - 227 (UniProt: A0A2S8PZG1)
a, b, c, d, e, f: 1 - 966 (UniProt: A0A6L9JN06)
3A, 3B, 3C, 3D, 3E, 3F: 1 - 466 (UniProt: A0A6L9JMV2)
| PDB | External Database | Details |
|---|---|---|
| His 2 | Asn 2 | conflict |
| Gly 35 | Ser 35 | conflict |
| Tyr 45 | Leu 45 | conflict |
| Gln 62 | His 62 | conflict |
| Ser 65 | Arg 65 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Pro 64 | Gln 64 | conflict |
| Pro 100 | Ala 100 | conflict |
| Ser 121 | Gly 121 | conflict |
| Thr 174 | Ala 174 | conflict |
| PDB | External Database | Details |
|---|---|---|
| - | Gln 157 | deletion |
| - | Glu 158 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Gln 267 | - | insertion |
| Lys 268 | - | insertion |
| Ile 269 | - | insertion |
| Ile 309 | Val 306 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2595094.6 | |
| All* | Total formula weight | 2595094.6 |
