9QDI
Crystal structure of BF3526 peptidase from Bacteroides fragilis in complex with a peptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Lipoprotein | polymer | 409 | 46148.8 | 8 | UniProt (Q5L9L3) Pfam (PF16217) Pfam (PF09471) | Bacteroides fragilis NCTC 9343 | |
| 2 | I, J, K, L (I, J, K, L) | Synthetic peptide SER-THR-PRO-PRO | polymer | 4 | 400.4 | 4 | synthetic construct | ||
| 3 | CA, DB, JA, M, QA... (D, H, E, A, F...) | POTASSIUM ION | non-polymer | 39.1 | 8 | Chemie (K) | |||
| 4 | DA, EA, EB, FB, KA... (D, H, E, A, F...) | ZINC ION | non-polymer | 65.4 | 16 | Chemie (ZN) | |||
| 5 | AA, AB, BB, FA, GA... (C, G, D, H, E...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 15 | Chemie (EDO) | |||
| 6 | BA, CB, OA, Q, UA (C, G, E, A, F) | N-PROPANOL | non-polymer | 60.1 | 5 | Chemie (POL) | |||
| 7 | IA (D) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 8 | PA (E) | 1,4-BUTANEDIOL | non-polymer | 90.1 | 1 | Chemie (BU1) | |||
| 9 | WA (G) | HEXANE-1,6-DIOL | non-polymer | 118.2 | 1 | Chemie (HEZ) | |||
| 10 | HB, IB, JB, KB, LB... (A, B, C, D, E...) | water | water | 18.0 | 1372 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H: 19 - 426 (UniProt: Q5L9L3)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 370792.3 | |
| Non-Polymers* | Number of molecules | 47 |
| Total formula weight | 2905.2 | |
| All* | Total formula weight | 373697.5 |
