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9Q3Y

GluN1b-GluN2B ATD in complex with radiprodil

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Glutamate receptor ionotropic, NMDA 1polymer35939977.81UniProt (A0A1L8F5J9)
Pfam (PF01094)
Xenopus laevis (African clawed frog)GluN1,N-methyl-D-aspartate receptor subunit NR1,NMD-R1
2B, D
(B, D)
Glutamate receptor ionotropic, NMDA 2Bpolymer36341280.82UniProt (Q00960)
Pfam (PF01094)
Rattus norvegicus (Norway rat)GluN2B,Glutamate [NMDA] receptor subunit epsilon-2,N-methyl D-aspartate receptor subtype 2B,NMDAR2B,NR2B
3C
(C)
Glutamate receptor ionotropic, NMDA 1polymer35839957.81UniProt (A0A1L8F5J9)
Pfam (PF01094)
Xenopus laevis (African clawed frog)GluN1,N-methyl-D-aspartate receptor subunit NR1,NMD-R1
4E
(E)
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.81In PDB
GlyTouCan (G22768VO)
5F, K, L, P, Q...
(A, B, C, D)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.26Chemie (NAG)
PubChem (24139)
6G, W
(A, D)
radiprodilnon-polymer397.42Chemie (A1CNW)
7H, R
(A, C)
SODIUM IONnon-polymer23.02Chemie (NA)
PubChem (923)
8I, J, M, N, O...
(A, B, C, D)
CHLORIDE IONnon-polymer35.59Chemie (CL)
PubChem (312)
9AA, BA, Y, Z
(C, D, A, B)
waterwater18.0131Chemie (HOH)
Sequence modifications
A: 23 - 407 (UniProt: A0A1L8F5J9)
PDBExternal DatabaseDetails
Gln 61Asn 61conflict
-Pro 98deletion
-Thr 99deletion
-Asp 100deletion
-His 101deletion
Gly 186Glu 186conflict
Gly 209Lys 187conflict
-Glu 188deletion
Pro 210Ser 189conflict
Gln 371Asn 350conflict
B, D: 32 - 394 (UniProt: Q00960)
PDBExternal DatabaseDetails
Asp 348Asn 348conflict
C: 23 - 406 (UniProt: A0A1L8F5J9)
PDBExternal DatabaseDetails
Gln 61Asn 61conflict
-Pro 98deletion
-Thr 99deletion
-Asp 100deletion
Gly 209Glu 186conflict
-Lys 187deletion
-Glu 188deletion
Pro 210Ser 189conflict
Gln 371Asn 350conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight162497.2
BranchedNumber of molecules1
Total formula weight910.8
Non-Polymers*Number of molecules19
Total formula weight2487.1
All*Total formula weight165895.2
*Water molecules are not included.

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PDB entries from 2026-08-19

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