9PZG
Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1542 | 499760.2 | 1 | GenBank (1789840096) | Escherichia coli BW25113 | |
| 2 | B (B) | Small ribosomal subunit protein uS2 | polymer | 241 | 26781.7 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli BW25113 | 30S ribosomal protein S2 |
| 3 | C (C) | Small ribosomal subunit protein uS3 | polymer | 233 | 26031.3 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli BW25113 | 30S ribosomal protein S3 |
| 4 | D (D) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli BW25113 | 30S ribosomal protein S4 |
| 5 | E (E) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli BW25113 | 30S ribosomal protein S5 |
| 6 | F (F) | Small ribosomal subunit protein bS6, fully modified isoform | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli BW25113 | |
| 7 | G (G) | Small ribosomal subunit protein uS7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli BW25113 | 30S ribosomal protein S7 |
| 8 | H (H) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli BW25113 | 30S ribosomal protein S8 |
| 9 | I (I) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli BW25113 | 30S ribosomal protein S9 |
| 10 | J (J) | Small ribosomal subunit protein uS10 | polymer | 103 | 11755.6 | 1 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli BW25113 | 30S ribosomal protein S10,Transcription termination/antitermination protein NusE |
| 11 | K (K) | Small ribosomal subunit protein uS11 | polymer | 129 | 13871.0 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli BW25113 | 30S ribosomal protein S11 |
| 12 | L (L) | Small ribosomal subunit protein uS12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli BW25113 | 30S ribosomal protein S12 |
| 13 | M (M) | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 1 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli BW25113 | 30S ribosomal protein S13 |
| 14 | N (N) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli BW25113 | 30S ribosomal protein S14 |
| 15 | O (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli BW25113 | 30S ribosomal protein S15 |
| 16 | P (P) | Small ribosomal subunit protein bS16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli BW25113 | 30S ribosomal protein S16 |
| 17 | Q (Q) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli BW25113 | 30S ribosomal protein S17 |
| 18 | R (R) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli BW25113 | 30S ribosomal protein S18 |
| 19 | S (S) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 1 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli BW25113 | 30S ribosomal protein S19 |
| 20 | T (T) | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli BW25113 | 30S ribosomal protein S20 |
| 21 | U (U) | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli BW25113 | 30S ribosomal protein S21 |
| 22 | V, W (V, W) | Ribosomal RNA small subunit methyltransferase I | polymer | 303 | 33313.0 | 2 | UniProt (P67088) Pfam (PF00590) Pfam (PF23016) | Escherichia coli | 16S rRNA 2'-O-ribose C1402 methyltransferase,rRNA (cytidine-2'-O-)-methyltransferase RsmI |
| 23 | X, YC (A, V) | 5'-{[(3S)-3-amino-3-carboxypropyl](ethyl)amino}-5'-deoxyadenosine | non-polymer | 395.4 | 2 | Chemie (AN6) | Escherichia coli BW25113 | ||
| 24 | AA, AB, AC, BA, BB... (A, W) | MAGNESIUM ION | non-polymer | 24.3 | 79 | Chemie (MG) | |||
| 25 | AD, BD, CD, DD, ED... (A, B, D, E, F...) | water | water | 18.0 | 170 | Chemie (HOH) |
Sequence modifications
V, W: 1 - 286 (UniProt: P67088)
| PDB | External Database | Details |
|---|---|---|
| Met -16 | - | initiating methionine |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ala -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 856204.2 | |
| Non-Polymers* | Number of molecules | 81 |
| Total formula weight | 2710.9 | |
| All* | Total formula weight | 858915.2 |
