9PXK
CryoEM structure of Ndh-Ncp complex from Bacillus subtilis with NADH and MK-8
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, F, G, H (C, A, B, D) | NADH dehydrogenase-like protein YjlD | polymer | 392 | 42003.0 | 4 | UniProt (P80861) | Bacillus subtilis subsp. subtilis str. 168 | Glucose starvation-inducible protein 5,GSI5 |
| 2 | B, C, D, E (E, F, G, H) | NDH-2 membrane coupling protein | polymer | 176 | 19408.6 | 4 | UniProt (O34633) | Bacillus subtilis subsp. subtilis str. 168 | |
| 3 | I, L, O, R (C, A, B, D) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 4 | Chemie (FAD) | |||
| 4 | J, M, P, S (C, A, B, D) | MENAQUINONE 8 | non-polymer | 717.1 | 4 | Chemie (MQ8) PubChem (5288843) | |||
| 5 | K, N, Q, T (C, A, B, D) | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE | non-polymer | 665.4 | 4 | Chemie (NAI) |
Sequence modifications
E, F, G, H: 1 - 140 (UniProt: O34633)
| PDB | External Database | Details |
|---|---|---|
| Trp -35 | - | expression tag |
| Ser -34 | - | expression tag |
| His -33 | - | expression tag |
| Pro -32 | - | expression tag |
| Gln -31 | - | expression tag |
| Phe -30 | - | expression tag |
| Glu -29 | - | expression tag |
| Lys -28 | - | expression tag |
| Gly -27 | - | expression tag |
| Gly -26 | - | expression tag |
| Gly -25 | - | expression tag |
| Ser -24 | - | expression tag |
| Gly -23 | - | expression tag |
| Gly -22 | - | expression tag |
| Gly -21 | - | expression tag |
| Ser -20 | - | expression tag |
| Gly -19 | - | expression tag |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ala -16 | - | expression tag |
| Trp -15 | - | expression tag |
| Ser -14 | - | expression tag |
| His -13 | - | expression tag |
| Pro -12 | - | expression tag |
| Gln -11 | - | expression tag |
| Phe -10 | - | expression tag |
| Glu -9 | - | expression tag |
| Lys -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Asn -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Tyr -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 245646.2 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 8672.4 | |
| All* | Total formula weight | 254318.7 |
