9PT4
Cryo-EM structure of GPR84-Gi complex bound to OX04529
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (R) | G-protein coupled receptor 84 | polymer | 615 | 67569.2 | 1 | UniProt (Q9NQS5) Pfam (PF00001) | Homo sapiens (human) | Inflammation-related G-protein coupled receptor EX33 |
| 2 | B (A) | Guanine nucleotide-binding protein G(i) subunit alpha-1 | polymer | 354 | 40414.0 | 1 | UniProt (P63096) Pfam (PF00503) | Homo sapiens (human) | Adenylate cyclase-inhibiting G alpha protein |
| 3 | C (B) | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | polymer | 376 | 40845.6 | 1 | UniProt (P62873) Pfam (PF25391) | Homo sapiens (human) | |
| 4 | D (G) | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | polymer | 71 | 7861.1 | 1 | UniProt (P59768) Pfam (PF00631) | Homo sapiens (human) | G gamma-I |
| 5 | E (N) | scFv16 | polymer | 266 | 28634.8 | 1 | Mus musculus (Mouse) | ||
| 6 | F (R) | 5-[3-[4-chloranyl-3-(trifluoromethyl)phenyl]propyl]-1-oxidanyl-pyridin-3-ol | non-polymer | 331.7 | 1 | Chemie (A1CKT) | |||
| 7 | G (R) | CHOLESTEROL | non-polymer | 386.7 | 1 | Chemie (CLR) PubChem (5997) |
Sequence modifications
R: 1 - 387 (UniProt: Q9NQS5)
A: 1 - 354 (UniProt: P63096)
B: 2 - 340 (UniProt: P62873)
| PDB | External Database | Details |
|---|---|---|
| Asp -52 | - | expression tag |
| Tyr -51 | - | expression tag |
| Lys -50 | - | expression tag |
| Asp -49 | - | expression tag |
| Asp -48 | - | expression tag |
| Asp -47 | - | expression tag |
| Asp -46 | - | expression tag |
| His -45 | - | expression tag |
| His -44 | - | expression tag |
| His -43 | - | expression tag |
| His -42 | - | expression tag |
| His -41 | - | expression tag |
| His -40 | - | expression tag |
| His -39 | - | expression tag |
| His -38 | - | expression tag |
| Gly -37 | - | expression tag |
| Gln -36 | - | expression tag |
| Pro -35 | - | expression tag |
| Gly -34 | - | expression tag |
| Asn -33 | - | expression tag |
| Gly -32 | - | expression tag |
| Ser -31 | - | expression tag |
| Ala -30 | - | expression tag |
| Phe -29 | - | expression tag |
| Leu -28 | - | expression tag |
| Leu -27 | - | expression tag |
| Ala -26 | - | expression tag |
| Pro -25 | - | expression tag |
| Asn -24 | - | expression tag |
| Gly -23 | - | expression tag |
| Ser -22 | - | expression tag |
| His -21 | - | expression tag |
| Ala -20 | - | expression tag |
| Pro -19 | - | expression tag |
| Asp -18 | - | expression tag |
| His -17 | - | expression tag |
| Asn -16 | - | expression tag |
| Val -15 | - | expression tag |
| Thr -14 | - | expression tag |
| Gln -13 | - | expression tag |
| Gln -12 | - | expression tag |
| Arg -11 | - | expression tag |
| Asp -10 | - | expression tag |
| Glu -9 | - | expression tag |
| Glu -8 | - | expression tag |
| Asn -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Tyr -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Val -1 | - | expression tag |
| Asp 0 | - | expression tag |
| His 388 | - | expression tag |
| Met 389 | - | expression tag |
| Gly 390 | - | expression tag |
| Ser 391 | - | expression tag |
| Ser 392 | - | expression tag |
| Gly 393 | - | expression tag |
| Gly 394 | - | expression tag |
| Gly 395 | - | expression tag |
| Gly 396 | - | expression tag |
| Ser 397 | - | expression tag |
| Gly 398 | - | expression tag |
| Gly 399 | - | expression tag |
| Gly 400 | - | expression tag |
| Gly 401 | - | expression tag |
| Ser 402 | - | expression tag |
| Ser 403 | - | expression tag |
| Gly 404 | - | expression tag |
| Val 405 | - | expression tag |
| Phe 406 | - | expression tag |
| Thr 407 | - | expression tag |
| Leu 408 | - | expression tag |
| Glu 409 | - | expression tag |
| Asp 410 | - | expression tag |
| Phe 411 | - | expression tag |
| Val 412 | - | expression tag |
| Gly 413 | - | expression tag |
| Asp 414 | - | expression tag |
| Trp 415 | - | expression tag |
| Glu 416 | - | expression tag |
| Gln 417 | - | expression tag |
| Thr 418 | - | expression tag |
| Ala 419 | - | expression tag |
| Ala 420 | - | expression tag |
| Tyr 421 | - | expression tag |
| Asn 422 | - | expression tag |
| Leu 423 | - | expression tag |
| Asp 424 | - | expression tag |
| Gln 425 | - | expression tag |
| Val 426 | - | expression tag |
| Leu 427 | - | expression tag |
| Glu 428 | - | expression tag |
| Gln 429 | - | expression tag |
| Gly 430 | - | expression tag |
| Gly 431 | - | expression tag |
| Val 432 | - | expression tag |
| Ser 433 | - | expression tag |
| Ser 434 | - | expression tag |
| Leu 435 | - | expression tag |
| Leu 436 | - | expression tag |
| Gln 437 | - | expression tag |
| Asn 438 | - | expression tag |
| Leu 439 | - | expression tag |
| Ala 440 | - | expression tag |
| Val 441 | - | expression tag |
| Ser 442 | - | expression tag |
| Val 443 | - | expression tag |
| Thr 444 | - | expression tag |
| Pro 445 | - | expression tag |
| Ile 446 | - | expression tag |
| Gln 447 | - | expression tag |
| Arg 448 | - | expression tag |
| Ile 449 | - | expression tag |
| Val 450 | - | expression tag |
| Arg 451 | - | expression tag |
| Ser 452 | - | expression tag |
| Gly 453 | - | expression tag |
| Glu 454 | - | expression tag |
| Asn 455 | - | expression tag |
| Ala 456 | - | expression tag |
| Leu 457 | - | expression tag |
| Lys 458 | - | expression tag |
| Ile 459 | - | expression tag |
| Asp 460 | - | expression tag |
| Ile 461 | - | expression tag |
| His 462 | - | expression tag |
| Val 463 | - | expression tag |
| Ile 464 | - | expression tag |
| Ile 465 | - | expression tag |
| Pro 466 | - | expression tag |
| Tyr 467 | - | expression tag |
| Glu 468 | - | expression tag |
| Gly 469 | - | expression tag |
| Leu 470 | - | expression tag |
| Ser 471 | - | expression tag |
| Ala 472 | - | expression tag |
| Asp 473 | - | expression tag |
| Gln 474 | - | expression tag |
| Met 475 | - | expression tag |
| Ala 476 | - | expression tag |
| Gln 477 | - | expression tag |
| Ile 478 | - | expression tag |
| Glu 479 | - | expression tag |
| Glu 480 | - | expression tag |
| Val 481 | - | expression tag |
| Phe 482 | - | expression tag |
| Lys 483 | - | expression tag |
| Val 484 | - | expression tag |
| Val 485 | - | expression tag |
| Tyr 486 | - | expression tag |
| Pro 487 | - | expression tag |
| Val 488 | - | expression tag |
| Asp 489 | - | expression tag |
| Asp 490 | - | expression tag |
| His 491 | - | expression tag |
| His 492 | - | expression tag |
| Phe 493 | - | expression tag |
| Lys 494 | - | expression tag |
| Val 495 | - | expression tag |
| Ile 496 | - | expression tag |
| Leu 497 | - | expression tag |
| Pro 498 | - | expression tag |
| Tyr 499 | - | expression tag |
| Gly 500 | - | expression tag |
| Thr 501 | - | expression tag |
| Leu 502 | - | expression tag |
| Val 503 | - | expression tag |
| Ile 504 | - | expression tag |
| Asp 505 | - | expression tag |
| Gly 506 | - | expression tag |
| Val 507 | - | expression tag |
| Thr 508 | - | expression tag |
| Pro 509 | - | expression tag |
| Asn 510 | - | expression tag |
| Met 511 | - | expression tag |
| Leu 512 | - | expression tag |
| Asn 513 | - | expression tag |
| Tyr 514 | - | expression tag |
| Phe 515 | - | expression tag |
| Gly 516 | - | expression tag |
| Arg 517 | - | expression tag |
| Pro 518 | - | expression tag |
| Tyr 519 | - | expression tag |
| Glu 520 | - | expression tag |
| Gly 521 | - | expression tag |
| Ile 522 | - | expression tag |
| Ala 523 | - | expression tag |
| Val 524 | - | expression tag |
| Phe 525 | - | expression tag |
| Asp 526 | - | expression tag |
| Gly 527 | - | expression tag |
| Lys 528 | - | expression tag |
| Lys 529 | - | expression tag |
| Ile 530 | - | expression tag |
| Thr 531 | - | expression tag |
| Val 532 | - | expression tag |
| Thr 533 | - | expression tag |
| Gly 534 | - | expression tag |
| Thr 535 | - | expression tag |
| Leu 536 | - | expression tag |
| Trp 537 | - | expression tag |
| Asn 538 | - | expression tag |
| Gly 539 | - | expression tag |
| Asn 540 | - | expression tag |
| Lys 541 | - | expression tag |
| Ile 542 | - | expression tag |
| Ile 543 | - | expression tag |
| Asp 544 | - | expression tag |
| Glu 545 | - | expression tag |
| Arg 546 | - | expression tag |
| Leu 547 | - | expression tag |
| Ile 548 | - | expression tag |
| Thr 549 | - | expression tag |
| Pro 550 | - | expression tag |
| Asp 551 | - | expression tag |
| Gly 552 | - | expression tag |
| Ser 553 | - | expression tag |
| Met 554 | - | expression tag |
| Leu 555 | - | expression tag |
| Phe 556 | - | expression tag |
| Arg 557 | - | expression tag |
| Val 558 | - | expression tag |
| Thr 559 | - | expression tag |
| Ile 560 | - | expression tag |
| Asn 561 | - | expression tag |
| Ser 562 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asn 47 | Ser 47 | engineered mutation |
| Ala 203 | Gly 203 | engineered mutation |
| Ala 245 | Glu 245 | engineered mutation |
| Ser 326 | Ala 326 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Met -9 | - | initiating methionine |
| His -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Gly 1 | - | expression tag |
| Gly 341 | - | expression tag |
| Ser 342 | - | expression tag |
| Ser 343 | - | expression tag |
| Gly 344 | - | expression tag |
| Gly 345 | - | expression tag |
| Gly 346 | - | expression tag |
| Gly 347 | - | expression tag |
| Ser 348 | - | expression tag |
| Gly 349 | - | expression tag |
| Gly 350 | - | expression tag |
| Gly 351 | - | expression tag |
| Gly 352 | - | expression tag |
| Ser 353 | - | expression tag |
| Ser 354 | - | expression tag |
| Gly 355 | - | expression tag |
| Val 356 | - | expression tag |
| Ser 357 | - | expression tag |
| Gly 358 | - | expression tag |
| Trp 359 | - | expression tag |
| Arg 360 | - | expression tag |
| Leu 361 | - | expression tag |
| Phe 362 | - | expression tag |
| Lys 363 | - | expression tag |
| Lys 364 | - | expression tag |
| Ile 365 | - | expression tag |
| Ser 366 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 185324.7 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 718.4 | |
| All* | Total formula weight | 186043.1 |






