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9PRQ

In situ structure of human mitoribosome in the A/T-P state from TACO1-knockout cells

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(0)
39S ribosomal protein L32, mitochondrialpolymer18821437.81UniProt (Q9BYC8)Homo sapiens (human)MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
2B
(1)
39S ribosomal protein L33, mitochondrialpolymer657635.21UniProt (O75394)Homo sapiens (human)MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
3C
(2)
39S ribosomal protein L34, mitochondrialpolymer9210183.91UniProt (Q9BQ48)Homo sapiens (human)MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
4D
(3)
39S ribosomal protein L35, mitochondrialpolymer18821558.51UniProt (Q9NZE8)Homo sapiens (human)MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
5E
(4)
39S ribosomal protein L36, mitochondrialpolymer10311809.31UniProt (Q9P0J6)Homo sapiens (human)MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
6F
(5)
39S ribosomal protein L37, mitochondrialpolymer42348183.31UniProt (Q9BZE1)Homo sapiens (human)MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
7G
(6)
39S ribosomal protein L38, mitochondrialpolymer38044659.41UniProt (Q96DV4)Homo sapiens (human)MRP-L38,Mitochondrial large ribosomal subunit protein mL38
8H
(7)
39S ribosomal protein L39, mitochondrialpolymer33838764.81UniProt (Q9NYK5)Homo sapiens (human)MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
9I
(8)
39S ribosomal protein L40, mitochondrialpolymer20624534.41UniProt (Q9NQ50)Homo sapiens (human)MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
10J
(9)
39S ribosomal protein L41, mitochondrialpolymer13715404.71UniProt (Q8IXM3)Homo sapiens (human)MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
11K
(A)
16S mitochondrial rRNApolymer1558499786.41GenBank (2756414513)Homo sapiens (human)
12L
(D)
39S ribosomal protein L2, mitochondrialpolymer30533355.91UniProt (Q5T653)Homo sapiens (human)MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
13M
(E)
39S ribosomal protein L3, mitochondrialpolymer34838689.61UniProt (P09001)Homo sapiens (human)MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
14N
(F)
39S ribosomal protein L4, mitochondrialpolymer31134970.21UniProt (Q9BYD3)Homo sapiens (human)MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
15O
(H)
39S ribosomal protein L9, mitochondrialpolymer26730296.41UniProt (Q9BYD2)Homo sapiens (human)MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
16P
(I)
39S ribosomal protein L10, mitochondrialpolymer26129322.51UniProt (Q7Z7H8)Homo sapiens (human)MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
17Q
(J)
39S ribosomal protein L11, mitochondrialpolymer19220716.21UniProt (Q9Y3B7)Homo sapiens (human)MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
18R
(K)
Large ribosomal subunit protein uL13mpolymer17820617.81UniProt (H2QWN0)Homo sapiens (human)39S ribosomal protein L13,mitochondrial
19S
(L)
39S ribosomal protein L14, mitochondrialpolymer14515973.71UniProt (Q6P1L8)Homo sapiens (human)MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
20T
(M)
39S ribosomal protein L15, mitochondrialpolymer29633473.81UniProt (Q9P015)Homo sapiens (human)MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
21U
(N)
39S ribosomal protein L16, mitochondrialpolymer25128496.31UniProt (Q9NX20)Homo sapiens (human)MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
22V
(O)
39S ribosomal protein L17, mitochondrialpolymer17520083.31UniProt (Q9NRX2)Homo sapiens (human)MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
23W
(P)
39S ribosomal protein L18, mitochondrialpolymer18020607.61UniProt (Q9H0U6)Homo sapiens (human)MRP-L18,Mitochondrial large ribosomal subunit protein uL18m
24X
(Q)
39S ribosomal protein L19, mitochondrialpolymer29233585.01UniProt (P49406)Homo sapiens (human)MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
25Y
(R)
39S ribosomal protein L20, mitochondrialpolymer14917479.71UniProt (Q9BYC9)Homo sapiens (human)MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
26Z
(S)
39S ribosomal protein L21, mitochondrialpolymer20522847.71UniProt (Q7Z2W9)Homo sapiens (human)MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
27AA
(T)
39S ribosomal protein L22, mitochondrialpolymer20623683.71UniProt (Q9NWU5)Homo sapiens (human)MRP-L22,39S ribosomal protein L25,mitochondrial,MRP-L25,Mitochondrial large ribosomal subunit protein uL22m
28BA
(U)
39S ribosomal protein L23, mitochondrialpolymer15317807.21UniProt (Q16540)Homo sapiens (human)MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
29CA
(W)
39S ribosomal protein L27, mitochondrialpolymer14816102.91UniProt (Q9P0M9)Homo sapiens (human)MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
30DA
(X)
39S ribosomal protein L28, mitochondrialpolymer25630202.91UniProt (Q13084)Homo sapiens (human)MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
31EA
(Y)
39S ribosomal protein L47, mitochondrialpolymer25029508.51UniProt (Q9HD33)Homo sapiens (human)MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
32FA
(Z)
39S ribosomal protein L30, mitochondrialpolymer16118582.81UniProt (Q8TCC3)Homo sapiens (human)MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
33GA
(g)
39S ribosomal protein L49, mitochondrialpolymer16619225.01UniProt (Q13405)Homo sapiens (human)MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
34HA
(V)
39S ribosomal protein L24, mitochondrialpolymer21624953.91UniProt (Q96A35)Homo sapiens (human)MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
35IA
(b)
39S ribosomal protein L43, mitochondrialpolymer21523457.81UniProt (Q8N983)Homo sapiens (human)MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a
36JA
(d)
39S ribosomal protein L45, mitochondrialpolymer30635402.91UniProt (Q9BRJ2)Homo sapiens (human)MRP-L45,Mitochondrial large ribosomal subunit protein mL45
37KA
(e)
39S ribosomal protein L46, mitochondrialpolymer27931748.11UniProt (Q9H2W6)Homo sapiens (human)MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
38LA
(h)
39S ribosomal protein L50, mitochondrialpolymer15818349.91UniProt (Q8N5N7)Homo sapiens (human)MRP-L50,Mitochondrial large ribosomal subunit protein mL50
39MA
(i)
39S ribosomal protein L51, mitochondrialpolymer12815125.91UniProt (Q4U2R6)Homo sapiens (human)MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
40NA
(j)
39S ribosomal protein L52, mitochondrialpolymer12313682.71UniProt (Q86TS9)Homo sapiens (human)MRP-L52,Mitochondrial large ribosomal subunit protein mL52
41OA
(k)
Large ribosomal subunit protein mL53polymer11212020.71UniProt (Q96EL3)Homo sapiens (human)39S ribosomal protein L53,mitochondrial,L53mt,MRP-L53
42PA
(l)
39S ribosomal protein L54, mitochondrialpolymer13815844.21UniProt (Q6P161)Homo sapiens (human)MRP-L54,Mitochondrial large ribosomal subunit protein mL54
43QA
(m)
39S ribosomal protein L55, mitochondrialpolymer12815160.41UniProt (Q7Z7F7)Homo sapiens (human)MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
44RA
(n)
Nascent polypeptidepolymer433677.51Homo sapiens
45SA
(o)
Ribosomal protein 63, mitochondrialpolymer10212292.31UniProt (Q9BQC6)Homo sapiens (human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
46TA
(q)
Growth arrest and DNA damage-inducible proteins-interacting protein 1polymer22225426.91UniProt (Q8TAE8)Homo sapiens (human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein
47UA
(r)
39S ribosomal protein S18a, mitochondrialpolymer19622224.11UniProt (Q9NVS2)Homo sapiens (human)S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
48VA, WA
(t, u)
39S ribosomal protein L12, mitochondrialpolymer19821378.22UniProt (P52815)Homo sapiens (human)MRP-L12,5c5-2,Mitochondrial large ribosomal subunit protein bL12m
49XA
(c)
39S ribosomal protein L44, mitochondrialpolymer33237583.31UniProt (Q9H9J2)Homo sapiens (human)MRP-L44,Mitochondrial large ribosomal subunit protein mL44
50YA
(f)
39S ribosomal protein L48, mitochondrialpolymer21223970.81UniProt (Q96GC5)Homo sapiens (human)MRP-L48,Mitochondrial large ribosomal subunit protein mL48
51ZA
(p)
Peptidyl-tRNA hydrolase ICT1, mitochondrialpolymer20623674.21UniProt (Q14197)Homo sapiens (human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
52AB
(s)
39S ribosomal protein S30, mitochondrialpolymer43950429.61UniProt (Q9NP92)Homo sapiens (human)S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
53BB
(AB)
28S ribosomal protein S2, mitochondrialpolymer29633298.21UniProt (Q9Y399)Homo sapiens (human)S2mt,Mitochondrial small ribosomal subunit protein uS2m
54CB
(AC)
28S ribosomal protein S24, mitochondrialpolymer16719046.21UniProt (Q96EL2)Homo sapiens (human)MRP-S24,S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47
55DB
(AD)
28S ribosomal protein S5, mitochondrialpolymer43048094.61UniProt (P82675)Homo sapiens (human)S5mt,Mitochondrial small ribosomal subunit protein uS5m
56EB
(AE)
28S ribosomal protein S6, mitochondrialpolymer12514250.61UniProt (P82932)Homo sapiens (human)S6mt,Mitochondrial small ribosomal subunit protein bS6m
57FB
(AF)
28S ribosomal protein S7, mitochondrialpolymer24228186.21UniProt (Q9Y2R9)Homo sapiens (human)S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a
58GB
(AG)
28S ribosomal protein S9, mitochondrialpolymer39645909.91UniProt (P82933)Homo sapiens (human)S9mt,Mitochondrial small ribosomal subunit protein uS9m
59HB
(AH)
28S ribosomal protein S10, mitochondrialpolymer20123033.51UniProt (P82664)Homo sapiens (human)S10mt,Mitochondrial small ribosomal subunit protein uS10m
60IB
(AJ)
28S ribosomal protein S12, mitochondrialpolymer13815200.91UniProt (O15235)Homo sapiens (human)S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m
61JB
(AK)
28S ribosomal protein S14, mitochondrialpolymer12815168.81UniProt (O60783)Homo sapiens (human)S14mt,Mitochondrial small ribosomal subunit protein uS14m
62KB
(AL)
28S ribosomal protein S15, mitochondrialpolymer25729903.31UniProt (P82914)Homo sapiens (human)S15mt,Mitochondrial small ribosomal subunit protein uS15m
63LB
(AM)
28S ribosomal protein S16, mitochondrialpolymer13715371.91UniProt (Q9Y3D3)Homo sapiens (human)S16mt,Mitochondrial small ribosomal subunit protein bS16m
64MB
(AN)
28S ribosomal protein S17, mitochondrialpolymer13014526.11UniProt (Q9Y2R5)Homo sapiens (human)S17mt,Mitochondrial small ribosomal subunit protein uS17m
65NB
(AO)
28S ribosomal protein S18b, mitochondrialpolymer25829440.61UniProt (Q9Y676)Homo sapiens (human)S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40
66OB
(AP)
28S ribosomal protein S18c, mitochondrialpolymer14215876.81UniProt (Q9Y3D5)Homo sapiens (human)S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m
67PB
(AR)
28S ribosomal protein S22, mitochondrialpolymer36041337.31UniProt (P82650)Homo sapiens (human)S22mt,Mitochondrial small ribosomal subunit protein mS22
68QB
(AS)
28S ribosomal protein S23, mitochondrialpolymer19021805.71UniProt (Q9Y3D9)Homo sapiens (human)S23mt,Mitochondrial small ribosomal subunit protein mS23
69RB
(AT)
28S ribosomal protein S25, mitochondrialpolymer17320146.41UniProt (P82663)Homo sapiens (human)S25mt,Mitochondrial small ribosomal subunit protein mS25
70SB
(AU)
28S ribosomal protein S26, mitochondrialpolymer20524259.81UniProt (Q9BYN8)Homo sapiens (human)S26mt,28S ribosomal protein S13,mitochondrial,S13mt,Mitochondrial small ribosomal subunit protein mS26
71TB
(AV)
28S ribosomal protein S27, mitochondrialpolymer41447669.31UniProt (Q92552)Homo sapiens (human)S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27
72UB
(AW)
28S ribosomal protein S28, mitochondrialpolymer18720878.81UniProt (Q9Y2Q9)Homo sapiens (human)S28mt,28S ribosomal protein S35,mitochondrial,S35mt,Mitochondrial small ribosomal subunit protein bS1m
73VB
(AZ)
28S ribosomal protein S33, mitochondrialpolymer10612657.81UniProt (Q9Y291)Homo sapiens (human)S33mt,Mitochondrial small ribosomal subunit protein mS33
74WB
(A0)
Small ribosomal subunit protein mS34polymer21725564.41UniProt (P82930)Homo sapiens (human)28S ribosomal protein S34,mitochondrial,MRP-S34,S34mt
75XB
(A1)
28S ribosomal protein S35, mitochondrialpolymer32336898.31UniProt (P82673)Homo sapiens (human)S35mt,28S ribosomal protein S28,mitochondrial,S28mt,Mitochondrial small ribosomal subunit protein mS35
76YB
(A3)
Aurora kinase A-interacting proteinpolymer19922395.31UniProt (Q9NWT8)Homo sapiens (human)AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38,Mitochondrial small ribosomal subunit protein mS38
77ZB
(Az)
mRNApolymer3410826.41Homo sapiens
78AC
(AY)
28S ribosomal protein S31, mitochondrialpolymer39545391.51UniProt (Q92665)Homo sapiens (human)S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31
79BC
(AA)
12S mitochondrial rRNApolymer954306218.31GenBank (1858621102)Homo sapiens (human)
80CC
(AI)
28S ribosomal protein S11, mitochondrialpolymer19420648.81UniProt (P82912)Homo sapiens (human)S11mt,Cervical cancer proto-oncogene 2 protein,HCC-2,Mitochondrial small ribosomal subunit protein uS11m
81DC
(OX)
Mitochondrial inner membrane protein OXA1Lpolymer43548574.61UniProt (Q15070)Homo sapiens (human)OXA1Hs,Oxidase assembly 1-like protein,OXA1-like protein
82EC
(a)
39S ribosomal protein L42, mitochondrialpolymer14216691.21UniProt (Q9Y6G3)Homo sapiens (human)MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
83FC
(A4)
Pentatricopeptide repeat domain-containing protein 3, mitochondrialpolymer68978648.51UniProt (Q96EY7)Homo sapiens (human)28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15
84GC
(AX)
28S ribosomal protein S29, mitochondrialpolymer39845634.41UniProt (P51398)Homo sapiens (human)S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29
85HC
(A2)
Small ribosomal subunit protein mS37polymer11813393.71UniProt (Q96BP2)Homo sapiens (human)28S ribosomal protein S37,mitochondrial,MRP-S37,Coiled-coil-helix-coiled-coil-helix domain-containing protein 1,Nuclear protein C2360
86IC
(AQ)
Small ribosomal subunit protein bS21mpolymer8710659.51UniProt (P82921)Homo sapiens (human)28S ribosomal protein S21,mitochondrial,MRP-S21,S21mt
87JC
(Ah)
A/T-tRNApolymer7724765.81Homo sapiens
88KC
(Ag)
Elongation factor Tu, mitochondrialpolymer45549946.91UniProt (P49411)Homo sapiens (human)EF-Tu,P43
89LC
(Ax)
P/P-tRNApolymer7122664.51GenBank (1896813686)Homo sapiens (human)
90MC
(B)
mitochondrial tRNAValpolymer7222989.81GenBank (1896813692)Homo sapiens (human)
91NC, OC, SJ
(0, 4, AO)
ZINC IONnon-polymer65.43Chemie (ZN)
92AI, AJ, BI, BJ, CI...
(A, AA, D, M, N...)
POTASSIUM IONnon-polymer39.154Chemie (K)
93AN, DJ, EJ, FJ, QC...
(AA, A)
SPERMIDINEnon-polymer145.27Chemie (SPD)
94SC
(A)
1,4-DIAMINOBUTANEnon-polymer88.21Chemie (PUT)
95AD, AE, AF, AG, AH...
(A, AA, AX, D, g...)
MAGNESIUM IONnon-polymer24.3204Chemie (MG)
96QJ, TJ, UJ
(r, AP, AT)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.83Chemie (FES)
97XJ
(AA)
NICOTINAMIDE-ADENINE-DINUCLEOTIDEnon-polymer663.41Chemie (NAD)
98YJ, YM
(AA)
SPERMINEnon-polymer202.32Chemie (SPM)
99BN
(AX)
ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
100DN
(AX)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
101EN
(B)
VALINEnon-polymer117.11Chemie (VAL)
Sequence modifications
A: 1671 - 3231 (GenBank: 2756414513)
PDBExternal DatabaseDetails
-A 2358deletion
-C 2359deletion
-U 2360deletion
K: 2 - 178 (UniProt: H2QWN0)
PDBExternal DatabaseDetails
Ace 1-acetylation
Tyr 132Asp 132conflict
k: 2 - 112 (UniProt: Q96EL3)
PDBExternal DatabaseDetails
Ace 1-acetylation
A2: 2 - 118 (UniProt: Q96BP2)
PDBExternal DatabaseDetails
Ace 1-acetylation
AQ: 2 - 87 (UniProt: P82921)
PDBExternal DatabaseDetails
Ace 1-acetylation
Arg 50Cys 50variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains91
Total formula weight3085342.5
Non-Polymers*Number of molecules278
Total formula weight11033.7
All*Total formula weight3096376.2
*Water molecules are not included.

249524

PDB entries from 2026-02-18

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