9PNU
Cryo-EM structure of K001-A1 Fab in complex with HIV-1 459C-OPT RnS DS-SOSIP Env trimer
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | K001-A1 Fab heavy chain | polymer | 246 | 26498.5 | 1 | Macaca mulatta | ||
| 2 | B (L) | K001-A1 Fab light chain | polymer | 220 | 24248.9 | 1 | Macaca mulatta | ||
| 3 | C, E, G (A, B, F) | 459C-OPT probe RnS DS-SOSIP gp41 | polymer | 179 | 19924.5 | 3 | Human immunodeficiency virus 1 | ||
| 4 | D, F, H (C, G, I) | 459C-OPT probe RnS DS-SOSIP gp120 | polymer | 470 | 53263.7 | 3 | Human immunodeficiency virus 1 | ||
| 5 | GA, I, MA, Q (g, D, m, Q) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 4 | In PDB GlyTouCan (G81315DD) | |||
| 6 | AA, CA, DA, FA, IA... (a, c, d, f, i...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 21 | In PDB GlyTouCan (G15407YE) | |||
| 7 | BA, M, QA, T (b, M, q, T) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 4 | In PDB GlyTouCan (G56014GC) | |||
| 8 | EA, HA, LA, R, SA... (e, h, l, R, s...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 9 | JA, UA (j, u) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB GlyTouCan (G22768VO) | |||
| 10 | AB, BB, CB, DB, EB... (A, C, B, G, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 270311.8 | |
| Branched | Number of molecules | 43 |
| Total formula weight | 26518.4 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 5309.0 | |
| All* | Total formula weight | 302139.3 |
