9PN5
Composite map of hypomethylated 80S ribosome treated with hygromycin B
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (BA) | Small ribosomal subunit protein uS2A | polymer | 252 | 28051.3 | 1 | UniProt (B3LI22) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S0-A,Nucleic acid-binding protein NAB1A |
| 2 | B (BB) | Small ribosomal subunit protein eS1A | polymer | 255 | 28798.5 | 1 | UniProt (B3RHV0) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S1-A |
| 3 | C (BC) | Small ribosomal subunit protein uS5 | polymer | 254 | 27490.8 | 1 | UniProt (P25443) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S2,Omnipotent suppressor protein SUP44,RP12,S4,YS5 |
| 4 | D (BE) | Small ribosomal subunit protein eS4A | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S4-A,RP5,S7,YS6 |
| 5 | E (BG) | Small ribosomal subunit protein eS6A | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S6-A,RP9,S10,YS4 |
| 6 | F (BH) | Small ribosomal subunit protein eS7A | polymer | 190 | 21658.2 | 1 | UniProt (P26786) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S7-A,RP30,RP40 |
| 7 | G (BI) | Small ribosomal subunit protein eS8A | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S8-A,RP19,S14,YS9 |
| 8 | H (BJ) | Small ribosomal subunit protein uS4A | polymer | 197 | 22487.9 | 1 | UniProt (O13516) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S9-A,RP21,S13,YP28,YS11 |
| 9 | I (BL) | Small ribosomal subunit protein uS17A | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S11-A,RP41,S18,YS12 |
| 10 | J (BN) | Small ribosomal subunit protein uS15 | polymer | 151 | 17059.9 | 1 | UniProt (P05756) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S13,S27a,YS15 |
| 11 | K (BO) | Small ribosomal subunit protein uS11A | polymer | 137 | 14562.7 | 1 | UniProt (P06367) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S14-A,RP59A |
| 12 | L (BV) | Small ribosomal subunit protein eS21A | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S21-A,S26,YS25 |
| 13 | M (BW) | Small ribosomal subunit protein uS8A | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S22-A,RP50,S24,YP58,YS22 |
| 14 | N (BX) | Small ribosomal subunit protein uS12A | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S23-A,RP37,S28,YS14 |
| 15 | O (BY) | Small ribosomal subunit protein eS24A | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S24-A,RP50 |
| 16 | P (Ba) | Small ribosomal subunit protein eS26B | polymer | 119 | 13480.9 | 1 | UniProt (P39939) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S26-B |
| 17 | Q (Bb) | Small ribosomal subunit protein eS27A | polymer | 82 | 8893.4 | 1 | UniProt (P35997) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S27-A,RP61,YS20 |
| 18 | R (Be) | Small ribosomal subunit protein eS30A | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S30-A |
| 19 | S (BD) | Small ribosomal subunit protein uS3 | polymer | 240 | 26542.8 | 1 | UniProt (P05750) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S3,RP13,YS3 |
| 20 | T (BF) | Small ribosomal subunit protein uS7 | polymer | 225 | 25072.6 | 1 | UniProt (P26783) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S5,RP14,S2,YS8 |
| 21 | U (BK) | Small ribosomal subunit protein eS10A | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S10-A |
| 22 | V (BP) | Small ribosomal subunit protein uS19 | polymer | 142 | 16031.9 | 1 | UniProt (Q01855) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S15,RIG protein,RP52,S21,YS21 |
| 23 | W (BQ) | Small ribosomal subunit protein uS9A | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S16-A,RP61R |
| 24 | X (BR) | Small ribosomal subunit protein eS17A | polymer | 136 | 15820.4 | 1 | UniProt (P02407) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S17-A,RP51A |
| 25 | Y (BS) | Small ribosomal subunit protein uS13A | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S18-A |
| 26 | Z (BT) | Small ribosomal subunit protein eS19A | polymer | 144 | 15942.1 | 1 | UniProt (P07280) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S19-A,RP55A,S16a,YP45,YS16A |
| 27 | AA (BU) | Small ribosomal subunit protein uS10 | polymer | 121 | 13929.0 | 1 | UniProt (P38701) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S20 |
| 28 | BA (BZ) | Small ribosomal subunit protein eS25A | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S25-A,RP45,S31,YS23 |
| 29 | CA (Bc) | Small ribosomal subunit protein eS28A | polymer | 67 | 7605.8 | 1 | UniProt (Q3E7X9) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S28-A,S33,YS27 |
| 30 | DA (Bd) | Small ribosomal subunit protein uS14A | polymer | 56 | 6675.7 | 1 | UniProt (P41057) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S29-A,S36,YS29 |
| 31 | EA (Bg) | Small ribosomal subunit protein RACK1 | polymer | 319 | 34841.2 | 1 | UniProt (P38011) | Saccharomyces cerevisiae BY4741 | Guanine nucleotide-binding protein subunit beta-like protein,Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1 |
| 32 | FA (Bf) | Ubiquitin-ribosomal protein eS31 fusion protein | polymer | 152 | 17254.2 | 1 | UniProt (P05759) | Saccharomyces cerevisiae BY4741 | |
| 33 | GA (BM) | Small ribosomal subunit protein eS12 | polymer | 143 | 15488.6 | 1 | UniProt (P48589) | Saccharomyces cerevisiae BY4741 | 40S ribosomal protein S12 |
| 34 | HA (B5) | 18S rRNA | polymer | 1798 | 579396.8 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 35 | IA (AA) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) | Saccharomyces cerevisiae BY4741 | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 36 | JA (AB) | Large ribosomal subunit protein uL3 | polymer | 387 | 43863.8 | 1 | UniProt (P14126) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 37 | KA (AC) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) | Saccharomyces cerevisiae BY4741 | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 38 | LA (A1) | 25S rRNA | polymer | 3184 | 1029118.9 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 39 | MA (A3) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (1039023754) | Saccharomyces cerevisiae BY4741 | |
| 40 | NA (A4) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1767169448) | Saccharomyces cerevisiae BY4741 | |
| 41 | OA (AD) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) | Saccharomyces cerevisiae BY4741 | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 42 | PA (AE) | Large ribosomal subunit protein eL6A | polymer | 176 | 20015.6 | 1 | UniProt (Q02326) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L6-A,L17,RP18,YL16 |
| 43 | QA (AF) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) | Saccharomyces cerevisiae BY4741 | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 44 | RA (AG) | Large ribosomal subunit protein eL8A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) | Saccharomyces cerevisiae BY4741 | |
| 45 | SA (AH) | Large ribosomal subunit protein uL6A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) | Saccharomyces cerevisiae BY4741 | |
| 46 | TA (AI) | Large ribosomal subunit protein uL16 | polymer | 221 | 25410.5 | 1 | UniProt (P41805) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L10,L9,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 47 | UA (AJ) | 60S ribosomal protein L11-A | polymer | 174 | 19755.7 | 1 | UniProt (P0C0W9) | Saccharomyces cerevisiae BY4741 | L16,Large ribosomal subunit protein uL5-A,RP39,YL22 |
| 48 | VA (AL) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL13-A |
| 49 | WA (AM) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL14-A |
| 50 | XA (AN) | Large ribosomal subunit protein eL15A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) | Saccharomyces cerevisiae BY4741 | |
| 51 | YA (AO) | Large ribosomal subunit protein uL13A | polymer | 199 | 22247.2 | 1 | UniProt (P26784) | Saccharomyces cerevisiae BY4741 | |
| 52 | ZA (AP) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) | Saccharomyces cerevisiae BY4741 | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 53 | AB (AQ) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL18-A,RP28 |
| 54 | BB (AR) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) | Saccharomyces cerevisiae BY4741 | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 55 | CB (AS) | Large ribosomal subunit protein eL20A | polymer | 178 | 21279.9 | 1 | UniProt (P0CX23) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L20-A,L18a |
| 56 | DB (AT) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL21-A |
| 57 | EB (AU) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) | Saccharomyces cerevisiae BY4741 | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 58 | FB (AV) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) | Saccharomyces cerevisiae BY4741 | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 59 | GB (AW) | Large ribosomal subunit protein eL24A | polymer | 155 | 17661.7 | 1 | UniProt (P04449) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L24-A,L30,RP29,YL21 |
| 60 | HB (AX) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 61 | IB (AY) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) | Saccharomyces cerevisiae BY4741 | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 62 | JB (AZ) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL27-A |
| 63 | KB (Aa) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) | Saccharomyces cerevisiae BY4741 | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 64 | LB (Ab) | Large ribosomal subunit protein eL29 | polymer | 59 | 6691.9 | 1 | UniProt (P05747) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L29,YL43 |
| 65 | MB (Ac) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) | Saccharomyces cerevisiae BY4741 | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 66 | NB (Ad) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) | Saccharomyces cerevisiae BY4741 | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 67 | OB (Ae) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL32 |
| 68 | PB (Af) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) | Saccharomyces cerevisiae BY4741 | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 69 | QB (Ag) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL34-A |
| 70 | RB (Ah) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL29-A |
| 71 | SB (Ai) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) | Saccharomyces cerevisiae BY4741 | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 72 | TB (Aj) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) | Saccharomyces cerevisiae BY4741 | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 73 | UB (Ak) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL38 |
| 74 | VB (Al) | 60S ribosomal protein L39 | polymer | 51 | 6358.6 | 1 | UniProt (P04650) | Saccharomyces cerevisiae BY4741 | L46,Large ribosomal subunit protein eL39,YL40 |
| 75 | WB (Am) | Ubiquitin-ribosomal protein eL40A fusion protein | polymer | 128 | 14583.1 | 1 | UniProt (P0CH08) | Saccharomyces cerevisiae BY4741 | |
| 76 | XB (An) | Small ribosomal subunit protein eS32A | polymer | 25 | 3354.2 | 1 | UniProt (P0CX86) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L41-A,L47,Large ribosomal subunit protein eL41A,YL41 |
| 77 | YB (Ao) | Large ribosomal subunit protein eL42A | polymer | 106 | 12246.7 | 1 | UniProt (P0CX27) | Saccharomyces cerevisiae BY4741 | 60S ribosomal protein L42-A,L41,YL27,YP44 |
| 78 | ZB (Ap) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) | Saccharomyces cerevisiae BY4741 | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 79 | AC, AD, AE, AF, AG... (B5, A1, A3, A4, AP...) | MAGNESIUM ION | non-polymer | 24.3 | 174 | Chemie (MG) PubChem (888) | |||
| 80 | AJ, BJ, CJ, DJ, EJ... (A1, B5, Ab, Ae) | POTASSIUM ION | non-polymer | 39.1 | 27 | Chemie (K) PubChem (813) | |||
| 81 | TJ (Ao) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 82 | AK, BK, CK, DK, EK... (BD, BT, Bd, B5, AA...) | water | water | 18.0 | 1268 | Chemie (HOH) |
Sequence modifications
AE: 1 - 176 (UniProt: Q02326)
AS: 1 - 172 (UniProt: P0CX23)
| PDB | External Database | Details |
|---|---|---|
| Lys 120 | Asn 120 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met -5 | - | initiating methionine |
| Pro -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Lys -2 | - | expression tag |
| Trp -1 | - | expression tag |
| Lys 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 78 |
| Total formula weight | 3037876.8 | |
| Non-Polymers* | Number of molecules | 202 |
| Total formula weight | 5350.1 | |
| All* | Total formula weight | 3043226.9 |
