9PM4
The structure of O-glycopeptidase BcM60C from Bacteroides caccae in complex with a 6-sialo core 1 glycan
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | O-glycopeptidase BcM60C | polymer | 524 | 59891.3 | 1 | UniProt (A0A6H9QAX6) | Bacteroides caccae ATCC 43185 | |
| 2 | B (D) | beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 674.6 | 1 | In PDB GlyTouCan (G56682BC) | |||
| 3 | C (A) | SERINE | non-polymer | 105.1 | 1 | Chemie (SER) PubChem (5951) | |||
| 4 | D (A) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) PubChem (32051) | |||
| 5 | E, F, G (A) | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
| 6 | H, I, J, K (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 7 | L (A) | water | water | 18.0 | 674 | Chemie (HOH) |
Sequence modifications
A: 1 - 520 (UniProt: A0A6H9QAX6)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| Met 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 59891.3 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 674.6 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 707.0 | |
| All* | Total formula weight | 61272.9 |
