9OZD
Crystal structure of the polysaccharide lyase RbmB from Vibrio cholerae bound to Vibrio Polysaccharide
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Polysaccharide lyase | polymer | 380 | 42697.0 | 4 | UniProt (Q9KTH3) | Vibrio cholerae | RbmB |
| 2 | E, F, H, J (E, F, H, J) | {[(2R,3S,4S)-3-acetamido-2,4-dihydroxy-3,4-dihydro-2H-pyran-6-carbonyl]amino}acetic acid (non-preferred name)-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-galactopyranose | branched | 760.6 | 4 | ||||
| 3 | G (G) | {[(2R,3S,4S)-3-acetamido-2,4-dihydroxy-3,4-dihydro-2H-pyran-6-carbonyl]amino}acetic acid (non-preferred name)-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-galactopyranose-(1-4)-{[(2R,3S,4R,5S,6R)-5-acetamido-3,4,6-trihydroxyoxane-2-carbonyl]amino}acetic acid (non-preferred name)-(1-4)-beta-D-glucopyranose | branched | 1197.0 | 1 | ||||
| 4 | I (I) | {[(2R,3S,4S)-3-acetamido-2,4-dihydroxy-3,4-dihydro-2H-pyran-6-carbonyl]amino}acetic acid (non-preferred name)-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-galactopyranose-(1-4)-{[(2R,3S,4R,5S,6R)-5-acetamido-3,4,6-trihydroxyoxane-2-carbonyl]amino}acetic acid (non-preferred name) | branched | 1034.9 | 1 | ||||
| 5 | DA, K, T, Z (D, A, B, C) | SODIUM ION | non-polymer | 23.0 | 4 | Chemie (NA) | |||
| 6 | AA, BA, EA, FA, L... (C, D, A, B) | GLYCEROL | non-polymer | 92.1 | 13 | Chemie (GOL) | |||
| 7 | CA, GA, Q, R, S... (C, D, A, B) | FORMIC ACID | non-polymer | 46.0 | 6 | Chemie (FMT) | |||
| 8 | HA, IA, JA, KA (A, B, C, D) | water | water | 18.0 | 1280 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 32 - 408 (UniProt: Q9KTH3)
| PDB | External Database | Details |
|---|---|---|
| Gly 29 | - | expression tag |
| Ser 30 | - | expression tag |
| Thr 31 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 170788.0 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 5274.5 | |
| Non-Polymers* | Number of molecules | 23 |
| Total formula weight | 1565.3 | |
| All* | Total formula weight | 177627.8 |
