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9OYM

Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase III subunit deltapolymer34338745.61UniProt (P28630)
Pfam (PF06144)
Pfam (PF14840)
Escherichia coli
2B, C, D
(B, C, D)
DNA polymerase III subunit taupolymer64371228.63UniProt (P06710)
Pfam (PF13177)
Pfam (PF22608)
Pfam (PF12169)
Pfam (PF12168)
Pfam (PF12170)
Escherichia coliDNA polymerase III subunit gamma
3E
(E)
DNA polymerase III subunit delta'polymer33436980.51UniProt (P28631)
Pfam (PF09115)
Pfam (PF13177)
Pfam (PF21500)
Escherichia coli
4F, G
(F, G)
Beta sliding clamppolymer36640630.52UniProt (P0A990)
Pfam (PF00712)
Pfam (PF02767)
Pfam (PF02768)
Escherichia coliBeta clamp,Sliding clamp,Beta-clamp processivity factor,DNA polymerase III beta sliding clamp subunit,DNA polymerase III subunit beta
5H
(H)
10-nt gapped DNA template strandpolymer5015389.91DNA molecule
6I
(I)
10-nt gapped DNA primer strand 1polymer206183.01DNA molecule
7J
(J)
DNA polymerase III subunit psipolymer13715188.31UniProt (P28632)
Pfam (PF03603)
DNA moleculeAccessory clamp loader complex subunit psi,Replication clamp loader subunit HolD
8K, N, Q, T
(B, C, D, E)
ZINC IONnon-polymer65.44Chemie (ZN)
PubChem (32051)
9L, O, R
(B, C, D)
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERnon-polymer523.23Chemie (AGS)
10M, P, S
(B, C, D)
MAGNESIUM IONnon-polymer24.33Chemie (MG)
PubChem (888)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight407434.1
Non-Polymers*Number of molecules10
Total formula weight1904.3
All*Total formula weight409338.4
*Water molecules are not included.

254917

PDB entries from 2026-06-10

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