9OVK
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (D1 domain local refine)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 1344 | 149102.5 | 1 | UniProt (Q696P8) | Human coronavirus OC43 | S glycoprotein,E2,Peplomer protein |
| 2 | B, C (B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 3 | D, E (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) PubChem (24139) | |||
| 4 | F (A) | 5-acetamido-8-O-(5-acetamido-9-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid | non-polymer | 642.6 | 1 | Chemie (A1AR1) PubChem (175639621) | |||
| 5 | G (A) | water | water | 18.0 | 332 | Chemie (HOH) |
Sequence modifications
A: 15 - 1295 (UniProt: Q696P8)
| PDB | External Database | Details |
|---|---|---|
| Ile 958 | Phe 958 | conflict |
| Pro 1025 | Thr 1025 | conflict |
| Pro 1070 | Ala 1070 | conflict |
| Pro 1071 | Leu 1071 | conflict |
| Ser 1296 | - | expression tag |
| Gly 1297 | - | expression tag |
| Gly 1298 | - | expression tag |
| Tyr 1299 | - | expression tag |
| Ile 1300 | - | expression tag |
| Pro 1301 | - | expression tag |
| Glu 1302 | - | expression tag |
| Ala 1303 | - | expression tag |
| Pro 1304 | - | expression tag |
| Arg 1305 | - | expression tag |
| Asp 1306 | - | expression tag |
| Gly 1307 | - | expression tag |
| Gln 1308 | - | expression tag |
| Ala 1309 | - | expression tag |
| Tyr 1310 | - | expression tag |
| Val 1311 | - | expression tag |
| Arg 1312 | - | expression tag |
| Lys 1313 | - | expression tag |
| Asp 1314 | - | expression tag |
| Gly 1315 | - | expression tag |
| Glu 1316 | - | expression tag |
| Trp 1317 | - | expression tag |
| Val 1318 | - | expression tag |
| Leu 1319 | - | expression tag |
| Leu 1320 | - | expression tag |
| Ser 1321 | - | expression tag |
| Thr 1322 | - | expression tag |
| Phe 1323 | - | expression tag |
| Leu 1324 | - | expression tag |
| Asn 1325 | - | expression tag |
| Ser 1326 | - | expression tag |
| Gly 1327 | - | expression tag |
| Arg 1328 | - | expression tag |
| Ala 1329 | - | expression tag |
| His 1330 | - | expression tag |
| His 1331 | - | expression tag |
| His 1332 | - | expression tag |
| His 1333 | - | expression tag |
| His 1334 | - | expression tag |
| His 1335 | - | expression tag |
| Gly 1336 | - | expression tag |
| Ala 1337 | - | expression tag |
| Gly 1338 | - | expression tag |
| Gly 1339 | - | expression tag |
| Leu 1340 | - | expression tag |
| Asn 1341 | - | expression tag |
| Asp 1342 | - | expression tag |
| Ile 1343 | - | expression tag |
| Phe 1344 | - | expression tag |
| Glu 1345 | - | expression tag |
| Ala 1346 | - | expression tag |
| Gln 1347 | - | expression tag |
| Lys 1348 | - | expression tag |
| Ile 1349 | - | expression tag |
| Glu 1350 | - | expression tag |
| Trp 1351 | - | expression tag |
| His 1352 | - | expression tag |
| Glu 1353 | - | expression tag |
| Asp 1354 | - | expression tag |
| Thr 1355 | - | expression tag |
| Ala 1356 | - | expression tag |
| Ala 1357 | - | expression tag |
| Ala 1358 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 149102.5 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1085.0 | |
| All* | Total formula weight | 151036.3 |
