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9OM4

Cryo-EM structure of filament form Acidithiobacillus caldus (Aca) short prokaryotic argonautes, HNH-associated (SPARHA) with gRNA and tDNA

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E, I, M
(A, E, I, M)
HNH endonucleasepolymer43550263.34Acidithiobacillus caldus
2B, F, J, N
(B, F, J, N)
Prokaryotic argonaute MID-PIWI family proteinpolymer47153150.64Acidithiobacillus caldus
3C, G, K, O
(C, G, K, O)
RNA (5'-R(P*AP*UP*UP*UP*GP*GP*UP*UP*GP*CP*GP*GP*UP*GP*CP*UP*CP*U)-3')polymer185720.44Acidithiobacillus caldus
4D, H, L, P
(D, H, L, P)
DNA (5'-D(*AP*GP*AP*GP*CP*AP*CP*CP*GP*CP*AP*AP*CP*CP*AP*AP*AP*T)-3')polymer185487.64Acidithiobacillus caldus
5Q, R, S, T
(B, F, J, N)
MANGANESE (II) IONnon-polymer54.94Chemie (MN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains16
Total formula weight458487.7
Non-Polymers*Number of molecules4
Total formula weight219.8
All*Total formula weight458707.4
*Water molecules are not included.

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PDB entries from 2025-10-22

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