9OGY

Megrivirus E 3' internal ribosome entry site (IRES) RNA core region bound to rabbit ribosome

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (2)	18S ribosomal RNA	polymer	1870	603100.9	1		Oryctolagus cuniculus
2	B (A)	Megrivirus E 3' IRES RNA	polymer	270	86668.9	1	GenBank (1950449860)	Megrivirus E
3	C (B)	uS2 (SA)	polymer	295	32958.0	1	UniProt (G1TLT8) Pfam (PF00318) Pfam (PF16122)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein SA, 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
4	D (C)	40S ribosomal protein S3a	polymer	264	30002.1	1	UniProt (G1SS70) Pfam (PF01015)	Oryctolagus cuniculus (rabbit)
5	E (D)	40S ribosomal protein S2	polymer	221	24441.8	1	UniProt (O18789) Pfam (PF00333) Pfam (PF03719)	Oryctolagus cuniculus (rabbit)
6	F (E)	Ribosomal protein S3	polymer	281	31146.6	1	UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189)	Oryctolagus cuniculus (rabbit)
7	G (F)	40S ribosomal protein S4	polymer	263	29654.9	1	UniProt (G1TK17) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) Pfam (PF08071)	Oryctolagus cuniculus (rabbit)
8	H (G)	Ribosomal protein S5	polymer	204	22913.5	1	UniProt (G1TFM5) Pfam (PF00177)	Oryctolagus cuniculus (rabbit)
9	I (H)	40S ribosomal protein S6	polymer	249	28751.9	1	UniProt (G1TM55) Pfam (PF01092)	Oryctolagus cuniculus (rabbit)
10	J (I)	eS7	polymer	432	47356.2	1	UniProt (G1SVB0) Pfam (PF01251)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S7
11	K (J)	40S ribosomal protein S8	polymer	208	24263.4	1	UniProt (G1TJW1) Pfam (PF01201)	Oryctolagus cuniculus (rabbit)
12	L (K)	Ribosomal protein S9 (Predicted)	polymer	194	22641.6	1	UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479)	Oryctolagus cuniculus (rabbit)
13	M (L)	S10_plectin domain-containing protein	polymer	149	17156.9	1	UniProt (G1U0Y5) Pfam (PF03501)	Oryctolagus cuniculus (rabbit)
14	N (M)	Ribosomal protein S11	polymer	158	18468.8	1	UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366)	Oryctolagus cuniculus (rabbit)
15	O (N)	40S ribosomal protein S12	polymer	132	14539.0	1	UniProt (G1SFR8) Pfam (PF01248)	Oryctolagus cuniculus (rabbit)
16	P (O)	Ribosomal protein S13	polymer	151	17259.4	1	UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312)	Oryctolagus cuniculus (rabbit)
17	Q (P)	Ribosomal protein S14	polymer	168	18134.0	1	UniProt (A0AAA9WYR1) Pfam (PF00411)	Oryctolagus cuniculus (rabbit)
18	R (Q)	uS19	polymer	145	17049.2	1	UniProt (G1U0Q2) Pfam (PF00203)	Oryctolagus cuniculus (rabbit)
19	S (R)	Ribosomal protein S16	polymer	172	19213.5	1	UniProt (G1SGX4) Pfam (PF00380)	Oryctolagus cuniculus (rabbit)
20	T (S)	eS17	polymer	135	15552.1	1	UniProt (G1TU13) Pfam (PF00833)	Oryctolagus cuniculus (rabbit)
21	U (T)	uS13	polymer	152	17759.8	1	UniProt (G1TPG3) Pfam (PF00416)	Oryctolagus cuniculus (rabbit)
22	V (U)	eS19	polymer	145	16235.8	1	UniProt (G1TN62) Pfam (PF01090)	Oryctolagus cuniculus (rabbit)
23	W (V)	uS10	polymer	119	13398.8	1	UniProt (G1SIZ2) Pfam (PF00338)	Oryctolagus cuniculus (rabbit)
24	X (W)	40S ribosomal protein S21	polymer	83	9124.4	1	UniProt (G1TM82) Pfam (PF01249)	Oryctolagus cuniculus (rabbit)
25	Y (X)	Ribosomal protein S15a	polymer	130	14865.6	1	UniProt (G1TG89) Pfam (PF00410)	Oryctolagus cuniculus (rabbit)
26	Z (Y)	uS12	polymer	143	15844.7	1	UniProt (G1SZ47) Pfam (PF00164)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S23
27	AA (Z)	eS24	polymer	131	15237.1	1	UniProt (G1T3D8) Pfam (PF01282)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S24
28	BA (a)	eS25	polymer	124	13645.0	1	UniProt (G1TDB3) Pfam (PF03297)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S25
29	CA (b)	eS26	polymer	101	11645.8	1	UniProt (G1TFE8) Pfam (PF01283)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S26
30	DA (c)	40S ribosomal protein S27	polymer	84	9480.2	1	UniProt (G1TZ76) Pfam (PF01667)	Oryctolagus cuniculus (rabbit)
31	EA (d)	Ribosomal protein S28	polymer	69	7855.1	1	UniProt (G1TIB4) Pfam (PF01200)	Oryctolagus cuniculus (rabbit)
32	FA (e)	eS29	polymer	56	6690.8	1	UniProt (G1U7M4) Pfam (PF00253)	Oryctolagus cuniculus (rabbit)
33	GA (f)	40S ribosomal protein S30	polymer	133	14498.9	1	UniProt (G1T8A2) Pfam (PF00240) Pfam (PF04758)	Oryctolagus cuniculus (rabbit)
34	HA (g)	eS31	polymer	188	21431.7	1	UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599)	Oryctolagus cuniculus (rabbit)	40S ribosomal protein S27a, Ubiquitin carboxyl extension protein 80,Ubiquitin-40S ribosomal protein S27a
35	IA (h)	RACK1	polymer	317	35115.7	1	UniProt (G1SJB4) Pfam (PF00400)	Oryctolagus cuniculus (rabbit)
36	JA (n)	eL41	polymer	25	3473.5	1	UniProt (A0A087WNH4) Pfam (PF05162)	Oryctolagus cuniculus (rabbit)	60s ribosomal protein l41
37	KA, LA (b, g)	ZINC ION	non-polymer		65.4	2	Chemie (ZN)

Sequence modifications

B: 1 - 295 (UniProt: G1TLT8)

PDB	External Database	Details
Thr 114	Ala 114	conflict

F: 1 - 263 (UniProt: G1TK17)

PDB	External Database	Details
Gly 25	Ser 25	conflict
Arg 51	Lys 51	conflict
Thr 78	Ala 78	conflict
Val 156	Met 156	conflict

J: 1 - 208 (UniProt: G1TJW1)

PDB	External Database	Details
Arg 47	Gly 47	conflict

W: 1 - 83 (UniProt: G1TM82)

PDB	External Database	Details
Asn 3	Ser 3	conflict
Asp 4	Asn 4	conflict
Gln 33	Pro 33	conflict
Phe 50	Ser 50	conflict
Ala 75	Ser 75	conflict
Asp 76	His 76	conflict
Lys 81	Gln 81	conflict

b: 2 - 102 (UniProt: G1TFE8)

PDB	External Database	Details
Arg 28	Cys 28	conflict
Ala 56	Val 56	conflict

Contents of the asymmetric unit

Polymers	Number of chains	36
	Total formula weight	1347575.1
Non-Polymers*	Number of molecules	2
	Total formula weight	130.8
All*	Total formula weight	1347706.0

*Water molecules are not included.