9OGL
BG505 MD39.3 SOSIP.664 in complex with 3BC315, BG18 and VRC01 Fabs
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (D, F, I) | BG18 Fab heavy chain | polymer | 233 | 25043.2 | 3 | Homo sapiens | ||
| 2 | B, D, F (E, G, J) | BG18 Fab light chain | polymer | 214 | 22937.4 | 3 | Homo sapiens | ||
| 3 | G, I, K (K, N, P) | VRC01 Fab heavy chain | polymer | 224 | 24367.6 | 3 | Homo sapiens | ||
| 4 | H, J, L (M, O, Q) | VRC01 Fab light chain | polymer | 210 | 23172.7 | 3 | Homo sapiens | ||
| 5 | M (H) | 3BC315 Fab heavy chain | polymer | 232 | 24999.2 | 1 | Homo sapiens | ||
| 6 | N (L) | 3BC315 Fab light chain | polymer | 216 | 23009.6 | 1 | Homo sapiens | ||
| 7 | O, P, Q (A, B, C) | Envelope glycoprotein gp160 | polymer | 642 | 71434.5 | 3 | UniProt (A0A6H1VFU0) UniProt (A0A6H1VCU6) | Human immunodeficiency virus 1 | Env polyprotein |
| 8 | EA, R (e, R) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 9 | S (S) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 10 | AA, T (a, T) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1721.5 | 2 | In PDB GlyTouCan (G40702WU) | |||
| 11 | CA, U (c, U) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 2 | In PDB GlyTouCan (G47410OF) | |||
| 12 | V (V) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
| 13 | BA, DA, HA, W, X (b, d, h, W, X) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 5 | In PDB GlyTouCan (G42666HT) | |||
| 14 | FA, Y (f, Y) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB GlyTouCan (G22768VO) | |||
| 15 | Z (Z) | alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G99516QU) | |||
| 16 | GA (g) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1721.5 | 1 | In PDB GlyTouCan (G91704UR) | |||
| 17 | IA (i) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G01760ZU) | |||
| 18 | AB, BB, CB, DB, EB... (B, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
A, B, C: 31 - 503 (UniProt: A0A6H1VFU0)
A, B, C: 503 - 664 (UniProt: A0A6H1VCU6)
| PDB | External Database | Details |
|---|---|---|
| Glu 106 | Thr 105 | conflict |
| Gln 240 | Pro 239 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Ser 291 | Pro 290 | conflict |
| Val 304 | Arg 303 | conflict |
| Tyr 319 | Ala 316 | conflict |
| Gln 363 | Asn 361 | conflict |
| Ser 375 | Tyr 373 | conflict |
| Cys 501 | Ala 498 | conflict |
| Ser 503 | - | linker |
| His 503 | - | linker |
| Ser 503 | - | linker |
| Gly 503 | - | linker |
| Ser 503 | - | linker |
| Gly 503 | - | linker |
| Gly 503 | - | linker |
| Ser 503 | - | linker |
| Gly 503 | - | linker |
| Ser 503 | - | linker |
| Gly 503 | - | linker |
| Gly 503 | - | linker |
| His 503 | - | linker |
| Ala 503 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Ser 519 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Pro 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 17 |
| Total formula weight | 548874.8 | |
| Branched | Number of molecules | 18 |
| Total formula weight | 15851.3 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 8627.1 | |
| All* | Total formula weight | 573353.3 |
