9OFQ
HCoV-229E S2P bound by one DH1533 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, E (C, A, B) | Surface glycoprotein | polymer | 1134 | 123593.9 | 3 | UniProt (A0A1B3TN99) | Human coronavirus 229E | |
| 2 | C (H) | DH1533 FAB heavy chain | polymer | 239 | 25302.3 | 1 | Homo sapiens (human) | ||
| 3 | D (L) | DH1533 FAB light chain | polymer | 214 | 23424.9 | 1 | Homo sapiens (human) | ||
| 4 | BB, DB, F, KA, OA... (1, 3, D, k, o...) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 7 | In PDB GlyTouCan (G22768VO) | |||
| 5 | BA, CA, G, H, MA... (b, c, E, F, m...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 8 | In PDB GlyTouCan (G15407YE) | |||
| 6 | AA, DA, EA, EB, FA... (a, d, e, 4, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 28 | In PDB GlyTouCan (G42666HT) | |||
| 7 | AB, CB, LA, S, U (0, 2, l, S, U) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 5 | In PDB GlyTouCan (G22573RC) | |||
| 8 | X (X) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G09724ZC) | |||
| 9 | JA, TA, Y (j, t, Y) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 10 | FB, GB, HB, IB, JB... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 18 | Chemie (NAG) |
Sequence modifications
C, A, B: 1 - 1054 (UniProt: A0A1B3TN99)
| PDB | External Database | Details |
|---|---|---|
| Pro 869 | Ile 869 | conflict |
| Pro 870 | Ile 870 | conflict |
| Gly 1055 | - | expression tag |
| Ser 1056 | - | expression tag |
| Gly 1057 | - | expression tag |
| Tyr 1058 | - | expression tag |
| Ile 1059 | - | expression tag |
| Pro 1060 | - | expression tag |
| Glu 1061 | - | expression tag |
| Ala 1062 | - | expression tag |
| Pro 1063 | - | expression tag |
| Arg 1064 | - | expression tag |
| Asp 1065 | - | expression tag |
| Gly 1066 | - | expression tag |
| Gln 1067 | - | expression tag |
| Ala 1068 | - | expression tag |
| Tyr 1069 | - | expression tag |
| Val 1070 | - | expression tag |
| Arg 1071 | - | expression tag |
| Lys 1072 | - | expression tag |
| Asp 1073 | - | expression tag |
| Gly 1074 | - | expression tag |
| Glu 1075 | - | expression tag |
| Trp 1076 | - | expression tag |
| Val 1077 | - | expression tag |
| Leu 1078 | - | expression tag |
| Leu 1079 | - | expression tag |
| Ser 1080 | - | expression tag |
| Thr 1081 | - | expression tag |
| Phe 1082 | - | expression tag |
| Leu 1083 | - | expression tag |
| Gly 1084 | - | expression tag |
| Arg 1085 | - | expression tag |
| Ser 1086 | - | expression tag |
| Leu 1087 | - | expression tag |
| Glu 1088 | - | expression tag |
| Val 1089 | - | expression tag |
| Leu 1090 | - | expression tag |
| Phe 1091 | - | expression tag |
| Gln 1092 | - | expression tag |
| Gly 1093 | - | expression tag |
| Pro 1094 | - | expression tag |
| Gly 1095 | - | expression tag |
| His 1096 | - | expression tag |
| His 1097 | - | expression tag |
| His 1098 | - | expression tag |
| His 1099 | - | expression tag |
| His 1100 | - | expression tag |
| His 1101 | - | expression tag |
| His 1102 | - | expression tag |
| His 1103 | - | expression tag |
| Ser 1104 | - | expression tag |
| Ala 1105 | - | expression tag |
| Trp 1106 | - | expression tag |
| Ser 1107 | - | expression tag |
| His 1108 | - | expression tag |
| Pro 1109 | - | expression tag |
| Gln 1110 | - | expression tag |
| Phe 1111 | - | expression tag |
| Glu 1112 | - | expression tag |
| Lys 1113 | - | expression tag |
| Gly 1114 | - | expression tag |
| Gly 1115 | - | expression tag |
| Gly 1116 | - | expression tag |
| Ser 1117 | - | expression tag |
| Gly 1118 | - | expression tag |
| Gly 1119 | - | expression tag |
| Gly 1120 | - | expression tag |
| Gly 1121 | - | expression tag |
| Ser 1122 | - | expression tag |
| Gly 1123 | - | expression tag |
| Gly 1124 | - | expression tag |
| Ser 1125 | - | expression tag |
| Ala 1126 | - | expression tag |
| Trp 1127 | - | expression tag |
| Ser 1128 | - | expression tag |
| His 1129 | - | expression tag |
| Pro 1130 | - | expression tag |
| Gln 1131 | - | expression tag |
| Phe 1132 | - | expression tag |
| Glu 1133 | - | expression tag |
| Lys 1134 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 419508.7 | |
| Branched | Number of molecules | 52 |
| Total formula weight | 30013.7 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 3981.7 | |
| All* | Total formula weight | 453504.2 |
