9OAJ
AMC008 v4.2 SOSIP Env trimer in complex with CD4 D1D2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G (C, D, G) | T-cell surface glycoprotein CD4 | polymer | 458 | 51179.4 | 3 | UniProt (P01730) Pfam (PF00047) Pfam (PF05790) Pfam (PF09191) Pfam (PF12104) | Homo sapiens (human) | T-cell surface antigen T4/Leu-3 |
| 2 | B, E, H (B, E, H) | Envelope glycoprotein gp41 | polymer | 154 | 17428.8 | 3 | UniProt (Q1AII4) | Human immunodeficiency virus 1 | |
| 3 | C, F, I (A, F, I) | Envelope glycoprotein gp120 | polymer | 488 | 55212.5 | 3 | Human immunodeficiency virus 1 | ||
| 4 | J, K, L, M, N... (J, K, L, M, N...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AA, BA, CA, DA, EA... (F, H, I, B, A...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
B, E, H: 511 - 664 (UniProt: Q1AII4)
| PDB | External Database | Details |
|---|---|---|
| Thr 514 | Ala 4 | conflict |
| Asn 543 | Gln 33 | conflict |
| Pro 559 | Ile 49 | conflict |
| Cys 605 | Thr 95 | conflict |
| Ser 607 | Ala 97 | conflict |
| Thr 612 | Ala 102 | conflict |
| Leu 646 | Ile 136 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 371462.4 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 2546.4 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4645.4 | |
| All* | Total formula weight | 378654.1 |
