9O8N
Crystal structure of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) from Bordetella pertussis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | polymer | 278 | 29967.0 | 1 | UniProt (P0A4U8) Pfam (PF14805) Pfam (PF14602) | Bordetella pertussis Tohama I | Tetrahydrodipicolinate N-succinyltransferase,THDP succinyltransferase,THP succinyltransferase,Tetrahydropicolinate succinylase |
| 2 | B, C, D (A) | CALCIUM ION | non-polymer | 40.1 | 3 | Chemie (CA) | |||
| 3 | E, F, G (A) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 4 | H (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 5 | I (A) | water | water | 18.0 | 232 | Chemie (HOH) |
Sequence modifications
A: 2 - 271 (UniProt: P0A4U8)
| PDB | External Database | Details |
|---|---|---|
| Met -6 | - | initiating methionine |
| Ala -5 | - | expression tag |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| His -2 | - | expression tag |
| His -1 | - | expression tag |
| His 0 | - | expression tag |
| His 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 29967.0 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 318.7 | |
| All* | Total formula weight | 30285.7 |
