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9O3V

Human 80S ribosome stalled on MYC nascent chain

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L5)
28S rRNApolymer50691640884.51Homo sapiens
2B
(L7)
5S rRNApolymer12038691.91GenBank (23898)Homo sapiens (human)
3C
(L8)
5.8S rRNApolymer15650171.71GenBank (555853)Homo sapiens (human)
4D
(LA)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)Homo sapiens (human)Large ribosomal subunit protein uL2
5E
(LB)
Large ribosomal subunit protein uL3polymer40346224.11UniProt (P39023)Homo sapiens (human)60S ribosomal protein L3, HIV-1 TAR RNA-binding protein B,TARBP-B
6F
(LC)
Large ribosomal subunit protein uL4polymer42747804.61UniProt (P36578)Homo sapiens (human)60S ribosomal protein L4, 60S ribosomal protein L1
7G
(LD)
Large ribosomal subunit protein uL18polymer29734426.81UniProt (P46777)Homo sapiens (human)60S ribosomal protein L5
8H
(LE)
Large ribosomal subunit protein eL6polymer28832810.21UniProt (Q02878)Homo sapiens (human)60S ribosomal protein L6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
9I
(LF)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)Homo sapiens (human)Large ribosomal subunit protein uL30
10J
(LG)
Large ribosomal subunit protein eL8polymer26630061.81UniProt (P62424)Homo sapiens (human)60S ribosomal protein L7a,PLA-X polypeptide,Surfeit locus protein 3
11K
(LH)
Large ribosomal subunit protein uL6polymer19221899.51UniProt (P32969)Homo sapiens (human)60S ribosomal protein L9
12L
(LI)
Large ribosomal subunit protein uL16polymer21424630.11UniProt (P27635)Homo sapiens (human)60S ribosomal protein L10,Laminin receptor homolog,Protein QM,Ribosomal protein L10,Tumor suppressor QM
13M
(LJ)
Large ribosomal subunit protein uL5polymer17820288.51UniProt (P62913)Homo sapiens (human)60S ribosomal protein L11, CLL-associated antigen KW-12
14N
(LL)
Large ribosomal subunit protein eL13polymer21124321.71UniProt (P26373)Homo sapiens (human)60S ribosomal protein L13,Breast basic conserved protein 1
15O
(LM)
Large ribosomal subunit protein eL14polymer21523485.01UniProt (P50914)Homo sapiens (human)60S ribosomal protein L14,CAG-ISL 7
16P
(LN)
Large ribosomal subunit protein eL15polymer20424207.31UniProt (P61313)Homo sapiens (human)60S ribosomal protein L15
17Q
(LO)
Large ribosomal subunit protein uL13polymer20323633.41UniProt (P40429)Homo sapiens (human)60S ribosomal protein L13a,23 kDa highly basic protein
18R
(LP)
Large ribosomal subunit protein uL22polymer18421443.21UniProt (P18621)Homo sapiens (human)60S ribosomal protein L17,60S ribosomal protein L23,PD-1
19S
(LQ)
Large ribosomal subunit protein eL18polymer18821687.71UniProt (Q07020)Homo sapiens (human)60S ribosomal protein L18
20T
(LR)
Large ribosomal subunit protein eL19polymer19623535.31UniProt (P84098)Homo sapiens (human)60S ribosomal protein L19
21U
(LS)
Large ribosomal subunit protein eL20polymer17620808.51UniProt (Q02543)Homo sapiens (human)60S ribosomal protein L18a
22V
(LT)
Large ribosomal subunit protein eL21polymer16018610.01UniProt (P46778)Homo sapiens (human)60S ribosomal protein L21
23W
(LU)
Large ribosomal subunit protein eL22polymer12814813.01UniProt (P35268)Homo sapiens (human)60S ribosomal protein L22,EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15
24X
(LV)
Large ribosomal subunit protein uL14polymer14014892.51UniProt (P62829)Homo sapiens (human)60S ribosomal protein L23,60S ribosomal protein L17
25Y
(LW)
Large ribosomal subunit protein eL24polymer15717825.11UniProt (P83731)Homo sapiens (human)60S ribosomal protein L24,60S ribosomal protein L30
26Z
(LX)
Large ribosomal subunit protein uL23polymer15617740.21UniProt (P62750)Homo sapiens (human)60S ribosomal protein L23a
27AA
(LY)
Large ribosomal subunit protein uL24polymer14517303.41UniProt (P61254)Homo sapiens (human)60S ribosomal protein L26
28BA
(LZ)
Large ribosomal subunit protein eL27polymer13615835.81UniProt (P61353)Homo sapiens (human)60S ribosomal protein L27
29CA
(La)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)Homo sapiens (human)Large ribosomal subunit protein uL15
30DA
(Lb)
Large ribosomal subunit protein eL29polymer15917817.31UniProt (P47914)Homo sapiens (human)60S ribosomal protein L29,Cell surface heparin-binding protein HIP
31EA
(Lc)
Large ribosomal subunit protein eL30polymer11512805.11UniProt (P62888)Homo sapiens (human)60S ribosomal protein L30
32FA
(Ld)
Large ribosomal subunit protein eL31polymer12514494.91UniProt (P62899)Homo sapiens (human)60S ribosomal protein L31
33GA
(Le)
Large ribosomal subunit protein eL32polymer13515898.91UniProt (P62910)Homo sapiens (human)60S ribosomal protein L32
34HA
(Lf)
Large ribosomal subunit protein eL33polymer11012564.71UniProt (P18077)Homo sapiens (human)60S ribosomal protein L35a,Cell growth-inhibiting gene 33 protein
35IA
(Lg)
Large ribosomal subunit protein eL34polymer11713326.11UniProt (P49207)Homo sapiens (human)60S ribosomal protein L34
36JA
(Lh)
Large ribosomal subunit protein uL29polymer12314593.61UniProt (P42766)Homo sapiens (human)60S ribosomal protein L35
37KA
(Li)
Large ribosomal subunit protein eL36polymer10512290.91UniProt (Q9Y3U8)Homo sapiens (human)60S ribosomal protein L36
38LA
(Lj)
Large ribosomal subunit protein eL37polymer9711111.01UniProt (P61927)Homo sapiens (human)60S ribosomal protein L37,G1.16
39MA
(Lk)
Large ribosomal subunit protein eL38polymer708238.91UniProt (P63173)Homo sapiens (human)60S ribosomal protein L38
40NA
(Ll)
Large ribosomal subunit protein eL39polymer516426.81UniProt (P62891)Homo sapiens (human)60S ribosomal protein L39
41OA
(Lm)
Ubiquitin-ribosomal protein eL40 fusion proteinpolymer12814800.51UniProt (P62987)Homo sapiens (human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
42PA
(Ln)
Small ribosomal subunit protein eS32polymer253473.51UniProt (P62945)Homo sapiens (human)60S ribosomal protein L41,HG12,Large ribosomal subunit protein eL41
43QA
(Lo)
Large ribosomal subunit protein eL42polymer10612490.01UniProt (P83881)Homo sapiens (human)60S ribosomal protein L36a,60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein
44RA
(Lp)
Large ribosomal subunit protein eL43polymer9210299.41UniProt (P61513)Homo sapiens (human)60S ribosomal protein L37a
45SA
(Lr)
Large ribosomal subunit protein eL28polymer13715679.51UniProt (A0A2K6C1I7)Homo sapiens (human)60S ribosomal protein L28
46TA
(NC)
Nascent chainpolymer191884.01Homo sapiens
47UA
(Pt)
P-site glutamyl-tRNApolymer7524136.31Homo sapiens
48VA
(S2)
18S rRNApolymer1869603580.11Homo sapiens
49WA
(SA)
Small ribosomal subunit protein uS2polymer29532778.81UniProt (A0A2J8WY29)Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
50XA
(SB)
Small ribosomal subunit protein eS1polymer26430002.11UniProt (P61247)Homo sapiens (human)40S ribosomal protein S3a,v-fos transformation effector protein,Fte-1
51YA
(SC)
Small ribosomal subunit protein uS5polymer29331376.51UniProt (P15880)Homo sapiens (human)40S ribosomal protein S2,40S ribosomal protein S4,Protein LLRep3
52ZA
(SD)
Small ribosomal subunit protein uS3polymer24326729.41UniProt (P23396)Homo sapiens (human)40S ribosomal protein S3
53AB
(SE)
Small ribosomal subunit protein eS4, X isoformpolymer26329654.91UniProt (P62701)Homo sapiens (human)40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein
54BB
(SF)
Small ribosomal subunit protein uS7polymer20422913.51UniProt (P46782)Homo sapiens (human)40S ribosomal protein S5
55CB
(SG)
Small ribosomal subunit protein eS6polymer24928751.91UniProt (P62753)Homo sapiens (human)40S ribosomal protein S6,Phosphoprotein NP33
56DB
(SH)
Small ribosomal subunit protein eS7polymer19422168.91UniProt (P62081)Homo sapiens (human)40S ribosomal protein S7
57EB
(SI)
Small ribosomal subunit protein eS8polymer20824263.41UniProt (P62241)Homo sapiens (human)40S ribosomal protein S8
58FB
(SJ)
Small ribosomal subunit protein uS4polymer19422641.61UniProt (P46781)Homo sapiens (human)40S ribosomal protein S9
59GB
(SK)
Small ribosomal subunit protein eS10polymer16518933.81UniProt (P46783)Homo sapiens (human)40S ribosomal protein S10
60HB
(SL)
Small ribosomal subunit protein uS17polymer15818468.81UniProt (P62280)Homo sapiens (human)40S ribosomal protein S11
61IB
(SM)
Small ribosomal subunit protein eS12polymer13214539.01UniProt (P25398)Homo sapiens (human)40S ribosomal protein S12
62JB
(SN)
Small ribosomal subunit protein uS15polymer15117259.41UniProt (P62277)Homo sapiens (human)40S ribosomal protein S13
63KB
(SO)
Small ribosomal subunit protein uS11polymer15116302.81UniProt (P62263)Homo sapiens (human)40S ribosomal protein S14
64LB
(SP)
Small ribosomal subunit protein uS19polymer14517076.21UniProt (P62841)Homo sapiens (human)40S ribosomal protein S15,RIG protein
65MB
(SQ)
Small ribosomal subunit protein uS9polymer14616477.41UniProt (P62249)Homo sapiens (human)40S ribosomal protein S16
66NB
(SR)
Small ribosomal subunit protein eS17polymer13515578.21UniProt (P08708)Homo sapiens (human)40S ribosomal protein S17
67OB
(SS)
Small ribosomal subunit protein uS13polymer15217759.81UniProt (P62269)Homo sapiens (human)40S ribosomal protein S18,Ke-3,Ke3
68PB
(ST)
Small ribosomal subunit protein eS19polymer14516091.61UniProt (P39019)Homo sapiens (human)40S ribosomal protein S19
69QB
(SU)
Small ribosomal subunit protein uS10polymer11913398.81UniProt (P60866)Homo sapiens (human)40S ribosomal protein S20
70RB
(SV)
40S ribosomal protein S21polymer849150.41UniProt (P63220)Homo sapiens (human)Small ribosomal subunit protein eS21
71SB
(SW)
Small ribosomal subunit protein uS8polymer13014865.61UniProt (P62244)Homo sapiens (human)40S ribosomal protein S15a
72TB
(SX)
Small ribosomal subunit protein uS12polymer14315860.71UniProt (P62266)Homo sapiens (human)40S ribosomal protein S23
73UB
(SY)
40S ribosomal protein S24polymer13315463.31UniProt (P62847)Homo sapiens (human)Small ribosomal subunit protein eS24
74VB
(SZ)
Small ribosomal subunit protein eS25polymer12513776.21UniProt (P62851)Homo sapiens (human)40S ribosomal protein S25
75WB
(Sa)
Small ribosomal subunit protein eS26polymer11513047.51UniProt (P62854)Homo sapiens (human)40S ribosomal protein S26
76XB
(Sb)
Small ribosomal subunit protein eS27polymer849480.21UniProt (P42677)Homo sapiens (human)40S ribosomal protein S27,Metallopan-stimulin 1,MPS-1
77YB
(Sc)
Small ribosomal subunit protein eS28polymer697855.11UniProt (P62857)Homo sapiens (human)40S ribosomal protein S28
78ZB
(Sd)
Small ribosomal subunit protein uS14polymer566690.81UniProt (P62273)Homo sapiens (human)40S ribosomal protein S29
79AC
(Se)
FAU ubiquitin-like and ribosomal protein S30polymer13314415.71UniProt (P62861)Homo sapiens (human)
80BC
(Sf)
Ubiquitin-ribosomal protein eS31 fusion proteinpolymer15618004.01UniProt (P62979)Homo sapiens (human)Ubiquitin carboxyl extension protein 80
81CC
(Sg)
Receptor of activated protein C kinase 1polymer31735115.71UniProt (P63244)Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
82DC
(mR)
mRNApolymer832268011.81Homo sapiens
83AD, AE, AF, AG, AH...
(L5, LL, S2, ST, L7...)
MAGNESIUM IONnon-polymer24.3352Chemie (MG)
84AM, AN, AO, AP, AQ...
(L5, S2, SO, LL, LN...)
POTASSIUM IONnon-polymer39.1165Chemie (K)
85BP, CP, DP, HP, IU...
(L5, S2)
SPERMIDINEnon-polymer145.214Chemie (SPD)
86GP, OM, UO, UP, XO...
(L5)
1,4-DIAMINOBUTANEnon-polymer88.27Chemie (PUT)
87FP, WP
(L5)
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer122.12Chemie (TRS)
88CX, EX, FX, NS, OS...
(Sa, Sd, Sf, Lg, Lj...)
ZINC IONnon-polymer65.48Chemie (ZN)
89AY, AZ, BY, BZ, CY...
(LW, SI, LX, SL, LY...)
waterwater18.04730Chemie (HOH)
Sequence modifications
Lr: 2 - 137 (UniProt: A0A2K6C1I7)
PDBExternal DatabaseDetails
Ace 2-acetylation
SA: 2 - 295 (UniProt: A0A2J8WY29)
PDBExternal DatabaseDetails
Ace 2-acetylation
SV: 1 - 83 (UniProt: P63220)
PDBExternal DatabaseDetails
Ace 0-acetylation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight4082835.1
Non-Polymers*Number of molecules548
Total formula weight18424.6
All*Total formula weight4101259.7
*Water molecules are not included.

250059

PDB entries from 2026-03-04

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