9O2Y
Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1542 | 499873.4 | 1 | GenBank (1700704455) | Escherichia coli | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 3 | C (C) | Small ribosomal subunit protein uS3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) | Escherichia coli | |
| 4 | D (D) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) | Escherichia coli | |
| 5 | E (E) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) | Escherichia coli | |
| 6 | F (F) | Small ribosomal subunit protein bS6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) | Escherichia coli | |
| 7 | G (G) | Small ribosomal subunit protein uS7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) | Escherichia coli | |
| 8 | H (H) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) | Escherichia coli | |
| 9 | I (I) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 10 | J (J) | Small ribosomal subunit protein uS10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) | Escherichia coli | |
| 11 | K (K) | Small ribosomal subunit protein uS11 | polymer | 129 | 13872.0 | 1 | UniProt (P0A7R9) | Escherichia coli | 30S ribosomal protein S11 |
| 12 | L (L) | Small ribosomal subunit protein uS12 | polymer | 124 | 13814.2 | 1 | UniProt (A0A0F1AUC4) | Escherichia coli | |
| 13 | M (M) | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) | Escherichia coli | |
| 14 | N (N) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 1 | UniProt (A0A2X1PQW4) | Escherichia coli | |
| 15 | O (O) | Small ribosomal subunit protein uS15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 16 | P (P) | Small ribosomal subunit protein bS16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 17 | Q (Q) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 18 | R (R) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) | Escherichia coli | |
| 19 | S (S) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) | Escherichia coli | |
| 20 | T (T) | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 21 | U (U) | Small ribosomal subunit protein bS21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) | Escherichia coli | |
| 22 | V (X) | mRNA | polymer | 28 | 9099.5 | 1 | Escherichia coli | ||
| 23 | W (Z) | P-site tRNA fMet | polymer | 77 | 24841.8 | 1 | GenBank (1804121330) | Escherichia coli | |
| 24 | X (a) | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli | ||
| 25 | Y (b) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (1273279017) | Escherichia coli | |
| 26 | Z (c) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 27 | AA (d) | 50S ribosomal protein L3 | polymer | 209 | 22291.6 | 1 | UniProt (C3SQU2) | Escherichia coli | |
| 28 | BA (e) | Large ribosomal subunit protein uL4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) | Escherichia coli | 50S ribosomal protein L4 |
| 29 | CA (f) | Large ribosomal subunit protein uL5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) | Escherichia coli | 50S ribosomal protein L5 |
| 30 | DA (g) | Large ribosomal subunit protein uL6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) | Escherichia coli | 50S ribosomal protein L6 |
| 31 | EA (h) | Large ribosomal subunit protein bL9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) | Escherichia coli | 50S ribosomal protein L9 |
| 32 | FA (i) | Large ribosomal subunit protein uL13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) | Escherichia coli | 50S ribosomal protein L13 |
| 33 | GA (j) | Large ribosomal subunit protein uL14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) | Escherichia coli | 50S ribosomal protein L14 |
| 34 | HA (k) | Large ribosomal subunit protein uL15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) | Escherichia coli | 50S ribosomal protein L15 |
| 35 | IA (l) | 50S ribosomal protein L16 | polymer | 136 | 15343.3 | 1 | UniProt (A1AGK1) | Escherichia coli | |
| 36 | JA (m) | Large ribosomal subunit protein bL17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) | Escherichia coli | 50S ribosomal protein L17 |
| 37 | KA (n) | Large ribosomal subunit protein uL18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) | Escherichia coli | 50S ribosomal protein L18 |
| 38 | LA (o) | Large ribosomal subunit protein bL19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K8) | Escherichia coli | |
| 39 | MA (p) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) | Escherichia coli | |
| 40 | NA (q) | Large ribosomal subunit protein bL21 | polymer | 103 | 11586.4 | 1 | UniProt (Q1R6F0) | Escherichia coli | 50S ribosomal protein L21 |
| 41 | OA (r) | Large ribosomal subunit protein uL22 | polymer | 110 | 12253.4 | 1 | UniProt (Q1R610) | Escherichia coli | 50S ribosomal protein L22 |
| 42 | PA (s) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (C3SQV2) | Escherichia coli | |
| 43 | QA (t) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (C3SQZ7) | Escherichia coli | |
| 44 | RA (u) | Large ribosomal subunit protein bL25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) | Escherichia coli | |
| 45 | SA (v) | Large ribosomal subunit protein bL27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7M0) | Escherichia coli | |
| 46 | TA (w) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) | Escherichia coli | |
| 47 | UA (x) | Large ribosomal subunit protein uL29 | polymer | 63 | 7286.5 | 1 | UniProt (C3SQY2) | Escherichia coli | |
| 48 | VA (y) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (C3SR32) | Escherichia coli | |
| 49 | WA (z) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (C3TE02) | Escherichia coli | |
| 50 | XA (0) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (C3SME7) | Escherichia coli | |
| 51 | YA (1) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) | Escherichia coli | |
| 52 | ZA (2) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 53 | AB (3) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) | Escherichia coli | |
| 54 | BB (4) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) | Escherichia coli | Large ribosomal subunit protein bL31-A |
| 55 | CB (Y) | A-site tRNAPyl | polymer | 71 | 22896.7 | 1 | GenBank (1721134198) | Methanomethylophilus alvi | |
| 56 | DB (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) | |||
| 57 | AC, AD, AE, AF, AG... (A, a, b, c, d...) | MAGNESIUM ION | non-polymer | 24.3 | 320 | Chemie (MG) | |||
| 58 | AN, BN, DN, QE, RM... (a, A) | SPERMIDINE | non-polymer | 145.2 | 13 | Chemie (SPD) | |||
| 59 | UE (Z) | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 60 | CN (a) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 61 | EN, FN, GN, GO, HN... (a, c) | POTASSIUM ION | non-polymer | 39.1 | 10 | Chemie (K) | |||
| 62 | LO, MO (3, 4) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 63 | NO (Y) | (2R)-6-[(tert-butoxycarbonyl)amino]-2-(hydroxymethyl)hexanoic acid | non-polymer | 261.3 | 1 | Chemie (A1B70) | |||
| 64 | AP, BP, CP, DP, EP... (m, o, p, q, r...) | water | water | 18.0 | 3527 | Chemie (HOH) |
Sequence modifications
K: 1 - 139 (UniProt: P0A7R9)
Z: 1 - 75 (GenBank: 1804121330)
l: 1 - 136 (UniProt: A1AGK1)
Y: 1 - 75 (GenBank: 1721134198)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asn 119 | conflict |
| PDB | External Database | Details |
|---|---|---|
| 8an 76 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ms6 82 | Met 82 | conflict |
| PDB | External Database | Details |
|---|---|---|
| 8an 76 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 55 |
| Total formula weight | 2197370.5 | |
| Non-Polymers* | Number of molecules | 349 |
| Total formula weight | 11444.1 | |
| All* | Total formula weight | 2208814.6 |
