9O17
Cryo-EM structure of Methanosarcina acetivorans 70S ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S rRNA | polymer | 1478 | 478373.9 | 1 | GenBank (470466243) | Methanosarcina acetivorans | |
| 2 | B (AB) | Small ribosomal subunit protein uS2 | polymer | 247 | 27234.6 | 1 | UniProt (A0A832VZ76) | Methanosarcina acetivorans | |
| 3 | C (AC) | Small ribosomal subunit protein uS3 | polymer | 318 | 34780.4 | 1 | UniProt (Q8TRU1) Pfam (PF07650) Pfam (PF00189) | Methanosarcina acetivorans | 30S ribosomal protein S3 |
| 4 | D (AD) | Small ribosomal subunit protein eS1 | polymer | 203 | 22938.7 | 1 | UniProt (Q8TKI9) Pfam (PF01015) | Methanosarcina acetivorans | 30S ribosomal protein S3Ae,Ribosomal protein S1e |
| 5 | E (AE) | Small ribosomal subunit protein uS4 | polymer | 218 | 24559.3 | 1 | UniProt (Q8TRR1) Pfam (PF01479) | Methanosarcina acetivorans | 30S ribosomal protein S4 |
| 6 | F (AF) | Small ribosomal subunit protein eS4 | polymer | 235 | 26301.4 | 1 | UniProt (Q8TRT5) Pfam (PF08071) Pfam (PF00900) | Methanosarcina acetivorans | 30S ribosomal protein S4e |
| 7 | G (AG) | Small ribosomal subunit protein uS5 | polymer | 209 | 22732.3 | 1 | UniProt (Q8TRS7) Pfam (PF00333) Pfam (PF03719) | Methanosarcina acetivorans | 30S ribosomal protein S5 |
| 8 | H (AI) | Small ribosomal subunit protein uS7 | polymer | 189 | 21062.3 | 1 | UniProt (Q8TRC2) Pfam (PF00177) | Methanosarcina acetivorans | 30S ribosomal protein S7 |
| 9 | I (AJ) | Small ribosomal subunit protein uS8 | polymer | 130 | 14085.3 | 1 | UniProt (Q8TRT2) Pfam (PF00410) | Methanosarcina acetivorans | 30S ribosomal protein S8 |
| 10 | J (AK) | Small ribosomal subunit protein eS8 | polymer | 125 | 13802.0 | 1 | UniProt (Q8TS82) Pfam (PF01201) | Methanosarcina acetivorans | 30S ribosomal protein S8e |
| 11 | K (AL) | Small ribosomal subunit protein uS9 | polymer | 134 | 14512.7 | 1 | UniProt (Q8TT42) Pfam (PF00380) | Methanosarcina acetivorans | 30S ribosomal protein S9 |
| 12 | L (AN) | Small ribosomal subunit protein uS11 | polymer | 126 | 13324.3 | 1 | UniProt (Q8TRR0) Pfam (PF00411) | Methanosarcina acetivorans | 30S ribosomal protein S11 |
| 13 | M (AO) | Small ribosomal subunit protein uS12 | polymer | 142 | 15540.1 | 1 | UniProt (Q8TRC1) Pfam (PF00164) | Methanosarcina acetivorans | 30S ribosomal protein S12 |
| 14 | N (AP) | Small ribosomal subunit protein uS13 | polymer | 182 | 20693.9 | 1 | UniProt (Q8TRR2) Pfam (PF00416) | Methanosarcina acetivorans | 30S ribosomal protein S13 |
| 15 | O (AR) | Small ribosomal subunit protein uS14 | polymer | 50 | 5971.0 | 1 | UniProt (Q8TRT3) Pfam (PF00253) | Methanosarcina acetivorans | 30S ribosomal protein S14 type Z |
| 16 | P (AQ) | Small ribosomal subunit protein uS15 | polymer | 152 | 17503.6 | 1 | UniProt (Q8TS56) Pfam (PF08069) Pfam (PF00312) | Methanosarcina acetivorans | 30S ribosomal protein S15 |
| 17 | Q (AS) | Small ribosomal subunit protein uS17A | polymer | 109 | 12184.2 | 1 | UniProt (Q8TRT8) Pfam (PF00366) | Methanosarcina acetivorans | 30S ribosomal protein S17 1 |
| 18 | R (AU) | Small ribosomal subunit protein uS19 | polymer | 136 | 15467.9 | 1 | UniProt (Q8TRU3) Pfam (PF00203) | Methanosarcina acetivorans | 30S ribosomal protein S19 |
| 19 | S (AV) | Small ribosomal subunit protein eS19 | polymer | 149 | 16563.2 | 1 | UniProt (A0A832W9Q0) | Methanosarcina acetivorans | |
| 20 | T (AW) | Small ribosomal subunit protein eS24 | polymer | 101 | 11620.3 | 1 | UniProt (Q8TJT2) Pfam (PF01282) | Methanosarcina acetivorans | 30S ribosomal protein S24e |
| 21 | U (AX) | Small ribosomal subunit protein eS27 | polymer | 62 | 6955.0 | 1 | UniProt (P61931) Pfam (PF01667) | Methanosarcina acetivorans | 30S ribosomal protein S27e |
| 22 | V (AY) | Small ribosomal subunit protein eS28 | polymer | 76 | 8268.6 | 1 | UniProt (Q8TQL8) Pfam (PF01200) | Methanosarcina acetivorans | 30S ribosomal protein S28e |
| 23 | W (AH) | Small ribosomal subunit protein eS6 | polymer | 136 | 14474.8 | 1 | UniProt (Q8TQL4) Pfam (PF01092) | Methanosarcina acetivorans | 30S ribosomal protein S6e |
| 24 | X (AM) | Small ribosomal subunit protein uS10 | polymer | 102 | 11380.3 | 1 | UniProt (P61929) Pfam (PF00338) | Methanosarcina acetivorans | 30S ribosomal protein S10 |
| 25 | Y (AT) | Small ribosomal subunit protein eS17 | polymer | 64 | 7477.7 | 1 | UniProt (Q8THP2) Pfam (PF00833) | Methanosarcina acetivorans | 30S ribosomal protein S17e |
| 26 | Z (BA) | 23S rRNA | polymer | 2899 | 937667.8 | 1 | GenBank (19918815) | Methanosarcina acetivorans | |
| 27 | AA (BB) | 5S rRNA | polymer | 129 | 41399.6 | 1 | GenBank (19918815) | Methanosarcina acetivorans | |
| 28 | BA (BC) | Large ribosomal subunit protein uL2 | polymer | 238 | 25738.6 | 1 | UniProt (Q8TRU4) Pfam (PF00181) Pfam (PF03947) | Methanosarcina acetivorans | 50S ribosomal protein L2 |
| 29 | CA (BD) | Large ribosomal subunit protein uL3 | polymer | 337 | 36949.6 | 1 | UniProt (Q8TRU7) Pfam (PF00297) | Methanosarcina acetivorans | 50S ribosomal protein L3 |
| 30 | DA (BE) | Large ribosomal subunit protein uL4 | polymer | 253 | 27516.6 | 1 | UniProt (Q8TRU6) Pfam (PF00573) | Methanosarcina acetivorans | 50S ribosomal protein L4 |
| 31 | EA (BF) | Large ribosomal subunit protein uL5 | polymer | 165 | 18398.3 | 1 | UniProt (Q8TRT4) Pfam (PF00281) Pfam (PF00673) | Methanosarcina acetivorans | 50S ribosomal protein L5 |
| 32 | FA (BG) | Large ribosomal subunit protein uL6 | polymer | 176 | 19530.7 | 1 | UniProt (Q8TRT1) Pfam (PF00347) | Methanosarcina acetivorans | 50S ribosomal protein L6 |
| 33 | GA (BH) | Large ribosomal subunit protein eL8 | polymer | 120 | 12741.7 | 1 | UniProt (Q8TQL9) Pfam (PF01248) | Methanosarcina acetivorans | 50S ribosomal protein L7Ae,Ribosomal protein L8e |
| 34 | HA (BI) | Large ribosomal subunit protein uL16 | polymer | 173 | 19409.6 | 1 | UniProt (Q8TU90) Pfam (PF00252) | Methanosarcina acetivorans | 50S ribosomal protein L10e |
| 35 | IA (BJ) | Large ribosomal subunit protein uL13 | polymer | 143 | 16085.8 | 1 | UniProt (Q8TT43) Pfam (PF00572) | Methanosarcina acetivorans | 50S ribosomal protein L13 |
| 36 | JA (BK) | Large ribosomal subunit protein uL14 | polymer | 132 | 14356.9 | 1 | UniProt (Q8TRT7) Pfam (PF00238) | Methanosarcina acetivorans | 50S ribosomal protein L14 |
| 37 | KA (BL) | Large ribosomal subunit protein uL15 | polymer | 140 | 15129.0 | 1 | UniProt (Q8TRS5) Pfam (PF00828) | Methanosarcina acetivorans | 50S ribosomal protein L15 |
| 38 | LA (BM) | Large ribosomal subunit protein eL15 | polymer | 196 | 22650.1 | 1 | UniProt (Q8TPX0) Pfam (PF00827) | Methanosarcina acetivorans | 50S ribosomal protein L15e |
| 39 | MA (BN) | Large ribosomal subunit protein uL18 | polymer | 174 | 19233.7 | 1 | UniProt (Q8TRS8) Pfam (PF17144) | Methanosarcina acetivorans | 50S ribosomal protein L18 |
| 40 | NA (BO) | Large ribosomal subunit protein eL18 | polymer | 126 | 13715.0 | 1 | UniProt (Q8TT44) Pfam (PF17135) | Methanosarcina acetivorans | 50S ribosomal protein L18e |
| 41 | OA (BP) | Large ribosomal subunit protein eL19 | polymer | 151 | 17062.0 | 1 | UniProt (A0A832W9G6) | Methanosarcina acetivorans | |
| 42 | PA (BQ) | Large ribosomal subunit protein eL20 | polymer | 61 | 6972.0 | 1 | UniProt (Q8TIN5) Pfam (PF01775) | Methanosarcina acetivorans | 50S ribosomal protein L18Ae,50S ribosomal protein L20e,50S ribosomal protein LX |
| 43 | QA (BR) | Large ribosomal subunit protein eL21 | polymer | 97 | 11063.7 | 1 | UniProt (Q8TQU3) Pfam (PF01157) | Methanosarcina acetivorans | 50S ribosomal protein L21e |
| 44 | RA (BS) | Large ribosomal subunit protein uL22 | polymer | 151 | 16764.6 | 1 | UniProt (Q8TRU2) Pfam (PF00237) | Methanosarcina acetivorans | 50S ribosomal protein L22 |
| 45 | SA (BT) | Large ribosomal subunit protein uL23 | polymer | 82 | 9447.2 | 1 | UniProt (Q8TRU5) Pfam (PF00276) | Methanosarcina acetivorans | 50S ribosomal protein L23 |
| 46 | TA (BU) | Large ribosomal subunit protein uL24 | polymer | 119 | 13075.3 | 1 | UniProt (Q8TRT6) Pfam (PF16906) Pfam (PF00467) | Methanosarcina acetivorans | 50S ribosomal protein L24 |
| 47 | UA (BV) | Large ribosomal subunit protein eL24 | polymer | 62 | 7204.6 | 1 | UniProt (Q8TQL7) Pfam (PF01246) | Methanosarcina acetivorans | 50S ribosomal protein L24e |
| 48 | VA (BW) | Large ribosomal subunit protein uL29 | polymer | 67 | 7622.6 | 1 | UniProt (Q8TRU0) Pfam (PF00831) | Methanosarcina acetivorans | 50S ribosomal protein L29 |
| 49 | WA (BX) | Large ribosomal subunit protein uL30 | polymer | 153 | 17627.4 | 1 | UniProt (Q8TRS6) Pfam (PF00327) | Methanosarcina acetivorans | 50S ribosomal protein L30 |
| 50 | XA (BY) | Large ribosomal subunit protein eL30 | polymer | 99 | 10316.2 | 1 | UniProt (Q8TRB9) Pfam (PF01248) | Methanosarcina acetivorans | 50S ribosomal protein L30e |
| 51 | YA (BZ) | Large ribosomal subunit protein eL31 | polymer | 89 | 10331.1 | 1 | UniProt (Q8TIN3) Pfam (PF01198) | Methanosarcina acetivorans | 50S ribosomal protein L31e |
| 52 | ZA (Ba) | Large ribosomal subunit protein eL32 | polymer | 161 | 17880.4 | 1 | UniProt (A0A832W8Z7) | Methanosarcina acetivorans | |
| 53 | AB (Bb) | Large ribosomal subunit protein eL43 | polymer | 94 | 10557.5 | 1 | UniProt (A0A832SMV9) | Methanosarcina acetivorans | |
| 54 | BB (Bc) | Large ribosomal subunit protein eL37 | polymer | 56 | 6456.6 | 1 | UniProt (Q8TL48) Pfam (PF01907) | Methanosarcina acetivorans | 50S ribosomal protein L37e |
| 55 | CB (Bd) | Large ribosomal subunit protein eL39 | polymer | 51 | 6257.5 | 1 | UniProt (Q8TIN2) Pfam (PF00832) | Methanosarcina acetivorans | 50S ribosomal protein L39e |
| 56 | DB (Be) | Large ribosomal subunit protein eL40 | polymer | 52 | 5964.2 | 1 | UniProt (Q8TJ19) Pfam (PF01020) | Methanosarcina acetivorans | 50S ribosomal protein L40e |
| 57 | EB (Bf) | Large ribosomal subunit protein eL42 | polymer | 92 | 10873.0 | 1 | UniProt (A0A832W9V9) | Methanosarcina acetivorans | |
| 58 | FB (AZ) | Putative zinc finger domain-containing protein | polymer | 56 | 6162.3 | 1 | UniProt (A0A832S8D7) | Methanosarcina acetivorans | |
| 59 | AC, AD, BC, BD, CC... (BA, AA, Bc, AN, AS) | MAGNESIUM ION | non-polymer | 24.3 | 51 | Chemie (MG) | |||
| 60 | ID, JD, LD, MB, MD... (BV, Bb, Bc, AG, Be...) | ZINC ION | non-polymer | 65.4 | 9 | Chemie (ZN) |
Sequence modifications
AP: 1 - 162 (UniProt: Q8TRR2)
Ba: 1 - 158 (UniProt: A0A832W8Z7)
Be: 1 - 49 (UniProt: Q8TJ19)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | initiating methionine |
| Arg -18 | - | expression tag |
| Ala -17 | - | expression tag |
| Ala -16 | - | expression tag |
| Pro -15 | - | expression tag |
| Glu -14 | - | expression tag |
| Phe -13 | - | expression tag |
| Ser -12 | - | expression tag |
| Ala -11 | - | expression tag |
| Tyr -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Arg -7 | - | expression tag |
| Val -6 | - | expression tag |
| Phe -5 | - | expression tag |
| Asp -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Tyr -1 | - | expression tag |
| Arg 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -2 | - | initiating methionine |
| Ile -1 | - | expression tag |
| Met 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met -2 | - | initiating methionine |
| Thr -1 | - | expression tag |
| Lys 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 2309969.2 | |
| Non-Polymers* | Number of molecules | 60 |
| Total formula weight | 1828.2 | |
| All* | Total formula weight | 2311797.4 |
