9NYD
Cryo-EM structure of the glycosyltransferase GtrB in the pre-catalysis and product-bound state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, C, D) | Uncharacterized glycosyltransferase sll0501 | polymer | 341 | 39319.4 | 4 | UniProt (Q55487) Pfam (PF00535) | Synechocystis sp. PCC 6803 substr. Kazusa | |
| 2 | E, H, N (A, B, D) | URIDINE-5'-DIPHOSPHATE-GLUCOSE | non-polymer | 566.3 | 3 | Chemie (UPG) PubChem (16667381) PubChem (20776702) PubChem (20776703) PubChem (1166) PubChem (25011746) PubChem (16760700) PubChem (20776705) PubChem (20776706) PubChem (45109771) PubChem (23724458) PubChem (46226441) PubChem (46936243) PubChem (53477679) PubChem (56845790) PubChem (58538034) PubChem (439156) PubChem (59720988) PubChem (448801) PubChem (56650783) PubChem (56846106) PubChem (88869506) PubChem (88869507) PubChem (88869743) PubChem (88870643) PubChem (88883029) PubChem (88910951) PubChem (88941526) PubChem (89321600) PubChem (89360378) PubChem (89847362) PubChem (90056247) PubChem (8629) PubChem (18068) PubChem (439158) PubChem (448873) PubChem (640055) PubChem (90950359) PubChem (92328335) PubChem (92974127) PubChem (91746280) PubChem (6857410) PubChem (124933210) PubChem (92974126) PubChem (92974128) PubChem (92974129) PubChem (93535589) PubChem (129850353) PubChem (6857540) PubChem (102429624) PubChem (11734460) PubChem (12133414) PubChem (13008857) PubChem (13987142) PubChem (124933209) PubChem (155893098) PubChem (158571248) PubChem (162920685) PubChem (168265389) PubChem (134736387) PubChem (134736388) PubChem (138911444) PubChem (162920683) PubChem (162920684) PubChem (163626061) PubChem (166642644) PubChem (168720052) PubChem (174027848) | |||
| 3 | F, I, O (A, B, D) | [(2~{E},6~{E},10~{E},14~{E},18~{Z},22~{E},26~{Z},30~{E},34~{E},38~{E})-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34,38,42-undecaenyl] dihydrogen phosphate | non-polymer | 847.3 | 3 | Chemie (5TR) PubChem (1173) PubChem (5283548) PubChem (5280338) PubChem (117587708) PubChem (100979316) PubChem (11354952) PubChem (11388871) | |||
| 4 | G, J, K, P (A, B, C, D) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) PubChem (888) | |||
| 5 | L (C) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 1 | Chemie (UDP) PubChem (1158) PubChem (6031) PubChem (25323044) PubChem (25323048) PubChem (44298965) PubChem (53486216) PubChem (60098857) PubChem (57448939) PubChem (3084486) PubChem (91746160) PubChem (6101632) PubChem (92332560) PubChem (92332561) PubChem (92332562) PubChem (92332563) PubChem (93088131) PubChem (93630083) PubChem (6604175) PubChem (11811538) PubChem (12049241) | |||
| 6 | M (C) | undecaprenyl phosphate-glucose | non-polymer | 1009.4 | 1 | Chemie (A1B94) PubChem (44144663) PubChem (44229191) PubChem (46173805) PubChem (3247027) PubChem (5283549) PubChem (101933103) PubChem (5460146) PubChem (6443780) PubChem (11953834) PubChem (134820364) |
Sequence modifications
A, B, C, D: 2 - 318 (UniProt: Q55487)
| PDB | External Database | Details |
|---|---|---|
| Met -22 | - | initiating methionine |
| His -21 | - | expression tag |
| His -20 | - | expression tag |
| His -19 | - | expression tag |
| His -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Ser -14 | - | expression tag |
| Gly -13 | - | expression tag |
| Val -12 | - | expression tag |
| Asp -11 | - | expression tag |
| Leu -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Thr -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Asn -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Tyr -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Asn 0 | - | expression tag |
| Ala 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 157277.7 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 5751.6 | |
| All* | Total formula weight | 163029.3 |
