9NYC
Cryo-EM structure of the glycosyltransferase GtrB in the substrate-bound state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, D, B, C) | Glycosyltransferase sll0501 | polymer | 341 | 39319.4 | 4 | UniProt (Q55487) Pfam (PF00535) | Synechocystis sp. PCC 6803 substr. Kazusa | |
| 2 | E, H, K, N (A, D, B, C) | URIDINE-5'-DIPHOSPHATE-GLUCOSE | non-polymer | 566.3 | 4 | Chemie (UPG) | |||
| 3 | F, I, L, O (A, D, B, C) | [(2~{E},6~{E},10~{E},14~{E},18~{Z},22~{E},26~{Z},30~{E},34~{E},38~{E})-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,14,18,22,26,30,34,38,42-undecaenyl] dihydrogen phosphate | non-polymer | 847.3 | 4 | Chemie (5TR) | |||
| 4 | G, J, M, P (A, D, B, C) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) |
Sequence modifications
A, D, B, C: 2 - 318 (UniProt: Q55487)
| PDB | External Database | Details |
|---|---|---|
| Met -22 | - | initiating methionine |
| His -21 | - | expression tag |
| His -20 | - | expression tag |
| His -19 | - | expression tag |
| His -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| Ser -15 | - | expression tag |
| Ser -14 | - | expression tag |
| Gly -13 | - | expression tag |
| Val -12 | - | expression tag |
| Asp -11 | - | expression tag |
| Leu -10 | - | expression tag |
| Gly -9 | - | expression tag |
| Thr -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Asn -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Tyr -4 | - | expression tag |
| Phe -3 | - | expression tag |
| Gln -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Asn 0 | - | expression tag |
| Ala 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 157277.7 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 5751.6 | |
| All* | Total formula weight | 163029.3 |
