9NGU
In situ cryo-EM structure of outer membrane cap (OMC) of the Legionella Dot/Icm T4SS machine
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AD, CB, CC, E... (Aa, Ae, Ak, Ao, Au...) | DotD | polymer | 163 | 17860.7 | 26 | UniProt (Q5ZS45) Pfam (PF16816) | Legionella pneumophila subsp. pneumophila | |
| 2 | B, DC, FA, HD, JB... (Ab, Al, Av, Bf, Bp...) | LphA (DotK) | polymer | 189 | 21096.5 | 13 | UniProt (Q5ZYC5) Pfam (PF00691) | Legionella pneumophila subsp. pneumophila | |
| 3 | AB, C, EC, GA, ID... (Ac, Am, Aw, Bg, Bq...) | Putative auto-transporter adhesin head GIN domain-containing protein | polymer | 320 | 36095.4 | 13 | UniProt (Q5ZRN3) Pfam (PF10988) | Legionella pneumophila subsp. pneumophila | |
| 4 | BB, D, FC, HA, JD... (Ad, An, Ax, Bh, Br...) | Neurogenic locus notch protein homolog | polymer | 124 | 13598.9 | 13 | UniProt (Q5ZXA9) | Legionella pneumophila subsp. pneumophila | |
| 5 | BD, DB, F, HC, JA... (Af, Ap, Az, Bj, Bt...) | IcmG (DotF) | polymer | 269 | 29730.0 | 13 | UniProt (Q5ZYC0) | Legionella pneumophila subsp. pneumophila | |
| 6 | AA, CD, EB, G, IC... (Ag, Aq, Ba, Bk, Bu...) | IcmK (DotH) | polymer | 361 | 38958.9 | 13 | UniProt (Q5ZYC2) Pfam (PF12293) | Legionella pneumophila subsp. pneumophila | |
| 7 | BA, DD, FB, H, JC... (Ah, Ar, Bb, Bl, Bv...) | Outer membrane protein, OmpA family protein | polymer | 249 | 27582.0 | 13 | UniProt (Q5ZXS4) Pfam (PF00691) | Legionella pneumophila subsp. pneumophila | |
| 8 | AC, CA, ED, GB, I... (Ai, As, Bc, Bm, Bw...) | DotC | polymer | 303 | 34162.4 | 13 | UniProt (Q5ZS44) Pfam (PF16932) | Legionella pneumophila subsp. pneumophila | |
| 9 | BC, DA, FD, HB, J... (Aj, At, Bd, Bn, Bx...) | Secreted protein | polymer | 93 | 10348.0 | 13 | UniProt (A0AAN5PM39) | Legionella pneumophila subsp. pneumophila |
Sequence modifications
Aj, At, Bd, Bn, Bx, Ch, Cr, Db, Dl, Dv, Ef, Ep, Ez: 1 - 93 (UniProt: A0AAN5PM39)
| PDB | External Database | Details |
|---|---|---|
| Ala 43 | Gly 43 | conflict |
| Ser 44 | Ala 44 | conflict |
| Leu 46 | Ser 46 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 130 |
| Total formula weight | 3214815.0 | |
| All* | Total formula weight | 3214815.0 |
